barSeed - Barley Seed Development Database

Probe CUST_41878_PI390587928

Source Contig U35_1109

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41878_PI390587928	Hv_44K_v2	TTGATTAGCACGGCCTAATAACGGTGGTTACATAAATGGAAAACTGAGGTGTTCTCGTGC	1511	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.036	1.733	1.156	0.768	0.270	0.285
Raw	6567.597	8430.577	5157.803	5432.237	665.783	759.619

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362112	1577	2e-24	1511 - 1570	100	60 / 60	plus	ABC01977 ABC03299
MLOC	MLOC_21262.1	636	7e-23	41 - 101	98	60 / 61	minus	ABC03299
JLOC1	JLOC1_14756.1	626	4e-23	69 - 129	98	60 / 61	minus
Harvest21	ABC30621	389	3e-25	318 - 377	100	60 / 60	plus
Harvest21	ABC03297	762	3e-25	686 - 745	100	60 / 60	plus
Harvest35	U35_1109	1604	3e-25	1512 - 1571	100	60 / 60	plus

Contig Sequence (1604 bp)

>U35_1109 1604 Hv_44K_v2
CTACGCCCTCCAATTCCACCGTTCCGAGGCGGCGTCTGCGTCTCCTCCCCCACGCCCCGT
CCATCTCGCTGCCTCCAGCCCGGTGACACATCCGCCGCCGCGCCACCGTCGAATTCGCCT
CCTCTGCCCGCCGCTACGATCGCGGGGACGAAGATGCTGGGCGCCGCGAGGAGGCAGCTC
GGATCCGGCCATATGCTGGCGCAGGTGCTGCGGAGGCTCCGCCCGACGGCGGCGGCGTCC
ACGGAGGCGGCAAGGGGGTACTCCTCCGCGGCCAAGGAGATCACCGTACGTGACGCGTTG
AACTCCGCCCTAGATGAAGAAATGTCTGCCGATCCTTCTGTCTTTTTGATGGGCGAAGAG
GTTGGAGAATATCAAGGTGCATACAAGATTACGAAGGGCTTGCTTGACAAGTATGGTCCT
GATAGGGTTCTTGATACCCCAATCACTGAGGCTGGTTTTACAGGCATTGGTGTTGGTGCA
GCCTATCAAGGTCTTCGGCCAGTCATAGAGTTCATGACATTTAATTTCTCAATGCAGGCA
ATCGATCATATCATCAACTCAGCTGCCAAGTCAAACTACATGTCAGCTGGTCAGATAAAT
GTCCCAATTGTTTTCAGAGGACCAAACGGAGCTGCTGCTGGAGTTGGTGCTCAGCACTCA
CAGTGTTATGCAGCTTGGTTTGCGCATGTTCCAGGACTAAAGGTTCTGGCTCCATATTCT
TCAGAAGATGCCAGAGGCTTGCTAAAAGCTGCAATTAGGGATCCTGATCCCGTTGTTTTT
CTGGAAAATGAATTACTCTATGGAGAGTCATTCCCTGTTTCTGATGAAGTGCTTGATTCT
AGTTTCGCTCTGCCGATAGGCAAAGCTAAGATAGAGCGTGAGGGTAAAGATGTTACGATT
ACTGCATTCTCCAAGATGGTCGGTTATGCTCTTCAGGCTGCTGAGATACTGTCCAAGGAA
GGAATCAGTGCTGAGGTGATCAACCTCCGATCAATTAGGCCACTGGATAGAGCCGCCATA
AATGCATCTGTTAGGAAAACAAATAGATTGGTGACTCTTGAAGAAGGCTTCCCCCAGCAT
GGTGTTGGTGCTGAGATATGCATGTCTGTTGTAGAAGAAAGCTTTGAGTATCTTGATGCT
CCAATTGAGAGGATTGCTGGAGCTGATGTACCCATGCCCTATGCTGCCAACCTTGAGAGA
TTGGCTGTTCCACAGATTGAGGATATCGTCCGAGCGGCCAGGCGAGCCTGCTACAGAGCG
TTGCCCATGGCGGCAACTGCGTGATCGAAATTTCACTTTACTTTGCCCATGCTTTTTCCC
GTCGCCCGCCCGGCCAGAAACGTGTGTGTTCCATAATGGTATCCACAATTGCCCAAACTC
GAAGCGAGTTAAATTTTTGTAGGTGTGCCTTGGCATGTTTATTCTTTTAGCTGCTGCAGT
TGGATCTCACCGCATTCGCTGGTGCCTCCCTCCACTGTCTTGTGAATTATTACGCACGCA
GCTTTCGTTGATTGATTAGCACGGCCTAATAACGGTGGTTACATAAATGGAAAACTGAGG
TGTTCTCGTGCAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1109 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g33500.1	377	protein\|transketolase, putative, expressed
Brachypodium v1_2	Bradi4g34810.1	374
Arabidopsis v10	AT5G50850.1	363	\| Symbols: MAB1 \| Transketolase family protein \| chr5:20689671-20692976 FORWARD LENGTH=363