Tag: visualization
New in Tablet 1.11.03.14
Tablet has just been updated to version 1.11.03.14. BUG: OS X only. Added a temporary workaround for BAM files not being detected with the latest (1.6.0_24) version of Java due to changes in gzip handling.
New in Tablet 1.11.02.18
Tablet has just been updated to version 1.11.02.18. NEW: BAM files are now displayed with read count summaries, even before a contig has been viewed, so long as the index file was generated with samtools 0.1.8 or higher. NEW: Tablet now uses the samtools executable for some tasks. The Options Dialog allows […]
New in Tablet 1.11.01.25
Tablet has just been updated to version 1.11.02.18. NEW: Various improvements to the pair-matching code should result in much faster loading of paired-end data. NEW: Drawing paired-reads that include “link lines” is now faster. NEW: Added new right-click options to the main canvas that provides several export-to-disk options for reads. NEW: Added a […]
New in CurlyWhirly 1.10.12.21
CurlyWhirly has just been updated to version 1.10.12.21. NEW: Added support for multi-category datasets. NEW: Added annotation URLs allowing a web browser to be launched for the annotation URL of a given data point when it is clicked. NEW: Added drag and drop support for file opening. NEW: Added ability to customise category colours […]
New in Flapjack 0.10.10.07
Flapjack has just been updated to version 0.10.10.07. NEW: Projects can now be saved in a new Flapjack-specific binary format (at least 50x faster than the XML format). NEW: Added an option at import time to create a “super” chromosome, containing all the markers across all chromosomes. NEW: Flapjack can now load its […]
New in Tablet 1.10.10.06
Tablet has just been updated to version 1.10.10.06. BUG: OS X only. Temporary fix for loading problems on OS X 10.5.8 due to issues with the SQLite driver. Performance will be lower than normal. 10.6.x seems unaffected.
New in Tablet 1.10.09.20
Tablet has just been updated to version 1.10.09.20. NEW: Added the ability to search for sequence strings within the consensus/reference. BUG: Added fixes for issues where reads in SAM files weren’t being paired properly. BUG: Fixed a problem with read names that ended :1 or :2 not getting paired.
New in Tablet 1.10.09.10
Tablet has just been updated to version 1.10.09.10. NEW: Added support for paired-end data from SAM or BAM input files. NEW: Added graphical support for paired-end data via special paired-end packed and stacked views. NEW: The information tooltip over reads now displays differently based on normal or paired-end reads. NEW: Mouse-over on any […]
New in Tablet 1.10.05.21
Tablet has just been updated to version 1.10.05.21. BUG: Fixed a critical bug that was resulting in some contigs hiding reads when in packed mode.
New in Tablet 1.10.05.18
Tablet has just been updated to version 1.10.05.18. NEW: Implemented a new, hopefully more robust, method of determining the version number for update purposes. NEW: Added an option to set Picard’s SAMFileReader validation stringency to lenient to suppress SamValidation errors. NEW: Added a parse-time option force DNA ambiguity codes to be read as […]