barSeed - Barley Seed Development Database

Probe CUST_329_PI415269222

Source Contig TA30470_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_329_PI415269222	Hv_44K_v2	ATGGAGTCTGTCTCTGTCTACCGTACTGTGATGCAGTATTATCGTTTGTATCTTTGAACT	804	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375488	1613	2e-24	1541 - 1600	100	60 / 60	plus	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
JLOC1	JLOC1_16368.1	701	8e-25	216 - 275	100	60 / 60	plus
Harvest21	ABC01114	922	3e-25	130 - 189	100	60 / 60	minus	ABC01114
Harvest21	ABC01111	169	3e-25	48 - 107	100	60 / 60	minus
Harvest21	ABC01100	196	3e-25	62 - 121	100	60 / 60	plus
Harvest21	ABC01050	1259	3e-25	146 - 205	100	60 / 60	minus	ABC01050
Harvest35	U35_13715	1289	3e-25	1072 - 1131	100	60 / 60	plus

Contig Sequence (901 bp)

>TA30470_4513 901 Hv_44K_v2
TCCAAAAGGAGTCCACCCTCCCACCTGGTGCTCAGGNTTCNCGCACGTAGGCAGATCTTT
GTAAAGACCCTCCACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCGGACACCATCGA
CAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCGGACCAGCAGCGTCTAAT
CTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCGGACTACAACATCCAGAAGGA
GTCCACCCTCCACCTGGTGCTCAGGCTTCGCGGTGGTATGCAGATCTTTGTGAAGACCCT
CACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCGGACACCATCGACAACGTCAAGGC
CAAGATCCAGGACAAGGAGGGCATTCCACCGGACCAGCAGCGTCTAATCTTCGCCGGCAA
GCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAACATTCAGAAGGAATCCACCCTCCA
CCTTGTCCTCCGCCTTCGTGGTGGCATGCAAATCTTTGTAAAGACCCTCACGGGCAAGAC
CATCACATTGGAGGTGGAGTCTTCGGACACCATCGACAATGTGAAGGCAAAGATCCAGGA
CAAGGAAGGCATTCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGA
TGGCCGTACCTTGGCGGACTACAACATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCG
TCTCCGCGGTGGCCAGTAGGCTCCTGGCCATGGAACTGCTTCTGTCTCTGGGTTCACAAG
CCCCTGTCCATTATGTGTCCTCCAATGGAGTCTGTCTCTGTCTACCGTACTGTGATGCAG
TATTATCGTTTGTATCTTTGAACTNCTGGTGCGCAGCAGCTTTGGTAACTATAAAAATAA
G

Homology of Contig TA30470_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46770.6	306	8e-151	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.2	230	3e-152
Arabidopsis v10	AT4G05050.1	229	2e-151	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229