Tag: genotyping

Flapjack has just been updated to version 1.13.03.18. NEW: Added support for duplicating a line. NEW: Optimised some of the similarity matrix calculation code to make it about      50% faster. NEW: Enhanced SplitProject so it can selectively process datasets, with optional      renaming of them. BUG: Export options for all-chromosomes were not behaving properly […]

Flapjack has just been updated to version 1.12.05.25. NEW: Sorting by trait can now be done on any number of sort levels. NEW: Redesigned the Sort by Trait dialog to present a tabular control for      defining the sort levels. NEW: Added file header support so Flapjack can properly identify its input      files. NEW: […]

Flapjack has just been updated to version 1.11.12.13. NEW: Added the ability to export an all-by-all similarity matrix for the lines      within the current view. NEW: Added support for a sort splitter, that denotes that all lines above it      are exempt from sorting and always keep their order. Lines below are      sorted […]

Flapjack has just been updated to version 1.11.07.06. NEW: Added a new option to the edit menu – Filter missing markers – that allows      the removal of markers with missing data over a given threshold limit. NEW: You can now select up to three graphs to be displayed alongside the      genotypes at one […]

Flapjack has just been updated to version 1.11.04.21. NEW: The CreateProject executable will now append datasets into existing      projects if the file already exists. NEW: Phenotypic trait data can now be exported from Flapjack to a file on disk. NEW: QTL data can now be exported from Flapjack to a file on disk. BUG: […]

Flapjack has just been updated to version 1.11.04.19. NEW: Flapjack is now a version 1.x release, after being published in      Bioinformatics. NEW: SCRI become the The James Hutton Institute in April 2011, and Flapjack has      been branded accordingly. NEW: Flapjack now supports importing and displaying graph data      (http://bioinf.hutton.ac.uk/flapjack/help/graphs.shtml). NEW: Added a Filter […]

Flapjack has just been updated to version 0.10.10.07. NEW: Projects can now be saved in a new Flapjack-specific binary format (at      least 50x faster than the XML format). NEW: Added an option at import time to create a “super” chromosome, containing      all the markers across all chromosomes. NEW: Flapjack can now load its […]

Flapjack has just been updated to version 0.10.05.17. NEW: Implemented a more robust method for version checking and updating of      Flapjack CHG: Added the “Close” button back to the Filter QTLs dialog. BUG: Filtering QTL using the Filter dialog wasn’t working until after the      display had been manually refreshed.

Flapjack has just been updated to version 0.10.05.07. CHG: Minor modifications (for Windows only) to improve compatibility with      Windows 7.

Flapjack has just been updated to version 0.10.04.27. NEW: Implemented multicore/cpu rendering for the main canvas. NEW: Added an option to sort lines by importing an external file that contains      the order to put them in (one “line” per line). CHG: Removed the ability to back-buffer the entire main canvas. BUG: Fixed some rendering […]