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New in CurlyWhirly 1.15.12.10

By on 10/12/2015 in News
New in CurlyWhirly 1.15.12.10

CurlyWhirly has just been updated to version 1.15.12.10. CurlyWhirly now has the ability to create groups from Multi-selected points in future versions of Germinate. Fixed issue where category colour changes might not apply correctly. Fixed issue where the colour key / legend might not be produced correctly.  

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Paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

By on 13/11/2015 in News
Paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

Congratulations to Antonio Ribeiro on the publication of his new BMC Bioinformatics paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome Abstract Background Single Nucleotide Polymorphisms (SNPs) are widely used molecular markers, and their use has increased massively since the inception of Next Generation Sequencing […]

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Book Chapter: Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

By on 13/11/2015 in News
Book Chapter: Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

The Tablet team have contributed a chapter to Plant Bioinformatics (2nd Edition): Abstract: This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly important to have […]

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New in CurlyWhirly 1.15.09.01

By on 01/09/2015 in News
New in CurlyWhirly 1.15.09.01

CurlyWhirly has just been updated to version 1.15.09.01. CurlyWhirly now detects, removes and warns about duplicate data points during data import.  

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New in Flapjack 1.15.08.31

By on 31/08/2015 in News
New in Flapjack 1.15.08.31

Flapjack has just been updated to version 1.15.08.31. NEW: Updated all the installers to include the latest version of Java. NEW: The traits table will now show the heatmap colours behind each table cell. NEW: Flapjack can now load HDF5 files that are of a specific Flapjack defined format (experimental). NEW: Importing of large genotype […]

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New in Tablet 1.15.08.28

By on 28/08/2015 in News
New in Tablet 1.15.08.28

Tablet has just been updated to version 1.15.08.28. NEW: The read-shadower now highlights all read pairs in addition to reads under the mouse. NEW: Added SHIFT+mouse wheel support, that scrolls the canvas horizontally. NEW: Updated the installers for better Windows 10 and OS X compatibility. NEW: Updated the Java runtime included in the installers to […]

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New in Strudel 1.15.08.25

By on 25/08/2015 in News
New in Strudel 1.15.08.25

Strudel has just been updated to version 1.15.05.25. NEW: Updated the installers to include the latest versions of the Java Runtime (1.8.0_60). NEW: Updated the installers to include compatibility with the latest versions of OS X. CHG: Removed the SCRI branding from the installers and replaced it with JHI branding.

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New in CurlyWhirly 1.15.08.10

By on 10/08/2015 in News
New in CurlyWhirly 1.15.08.10

CurlyWhirly has just been updated to version 1.15.08.10. Fixed issue where when the category selection panel is collapsed to a point where no scrollbar was present, expanding categories did not make the scrollbar reappear. Fixed issue with the sorting of points by selection, then colour breaking in some large datasets.  

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New in CurlyWhirly 1.15.06.04

By on 04/06/2015 in News
New in CurlyWhirly 1.15.06.04

CurlyWhirly has just been updated to version 1.15.06.29. Deselected spheres can now be rendered in greyscale (as in previous versions), transparent, or invisible. Sphere quality / detail can now be tweaked from the control panel. Reducing sphere quality should increase performance. Added an FPS counter to the bottom right of the main window (this updates […]

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New in Flapjack 1.15.04.27

By on 27/04/2015 in News
New in Flapjack 1.15.04.27

Flapjack has just been updated to version 1.15.04.27. BUG: Fixed an issue with importing SSR style data where the number of possible allele states can get very high.

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