barSeed - Barley Seed Development Database

Probe CUST_5215_PI390587928

Source Contig U35_13737

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5215_PI390587928	Hv_44K_v2	TGAATTTCTGTGGTGCAGCAGATTTGGATGAACTGTGGAATGAATGAATAAGTGAGCCCT	1193	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248348.1	1407	2e-24	1318 - 1377	100	60 / 60	plus	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
MLOC	MLOC_40086.1	273	2e-24	180 - 239	100	60 / 60	minus	None
Harvest21	ABC40967	395	3e-25	319 - 378	100	60 / 60	plus
Harvest21	ABC01094	973	3e-25	20 - 79	100	60 / 60	minus	ABC01094
Harvest21	ABC01118	641	2e-21	559 - 611	100	53 / 53	plus
Harvest35	U35_48758	524	3e-25	206 - 265	100	60 / 60	minus
Harvest35	U35_13737	1280	3e-25	1194 - 1253	100	60 / 60	plus
Harvest35	U35_13712	988	2e-21	906 - 958	100	53 / 53	plus

Contig Sequence (1280 bp)

>U35_13737 1280 Hv_44K_v2
CGGGACTCTTCCCCCTTTAAATCCCCACCCCTCCCGTCTCCTCTCCGCTCATCCAAATCC
TCCCCTCCTGCCAAGCGATCCCCGGAAAGTTTCCGATCGAATCGAAGCCAAGGCTTTCTC
CTCCACCTCCGAGATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGA
GGTTGAGTCCTCTGACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCAT
CCCCCCGGACCAGCAGCGCCTCATCTTTGCTGGGAAGCAGCTTGAGGACGGCCGAACCCT
CGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCAGGGGTGG
TATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGTCCTC
TGACACGATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA
GCAGCGCCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTTGCTGACTACAA
CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGTATGCAGATCTT
CGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCTTCGGACACCATCGA
CAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTCAT
CTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAGGA
GTCCACCCTGCACCTGGTGCTCCGCCTCAGGGGTGGTATGCAGATCTTCGTTAAGACCCT
CACTGGCAAGACCATCACCCTGGAGGTTGAGTCATCTGACACCATCGACAATGTGAAGGC
AAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAGCGCCTCATCTTTGCTGGTAA
GCAGCTTGAGGATGGCCGCACTCTGGCGGACTACAACATCCAGAAGGAGTCGACCCTCCA
CTTGGTGCTCCGCCTCCGTGGTGGCCTGTAAGTGCTTGGCCATGGAGCTGCTTATGTCTC
TGGGCTCACAATTTAGCTGTCTTTGAATTATCGGCGTGTCCGTCATCTGGTCTAGCGTTA
TGTTCTTCGTTGCTACTGTGTTGTGGTCTAGCGTTATGTTTGGTTGTGTCCCATGAATTT
CTGTGGTGCAGCAGATTTGGATGAACTGTGGAATGAATGAATAAGTGAGCCCTAAAAAAA
AAAAAAAAAAAAAAGAAAAA

Homology of Contig U35_13737 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g46770.6	306	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.1	306
Arabidopsis v10	AT4G02890.3	305	\| Symbols: UBQ14 \| Ubiquitin family protein \| chr4:1278747-1279664 REVERSE LENGTH=305