- Probe CUST_40121_PI390587928
- Source Contig U35_13683
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40121_PI390587928 | Hv_44K_v2 | TGAAAACTGAAACCTTGGAGTAATATGTTGTGTTTCCTGGATATTTGATCGCCTATTGCT | 627 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357664 | 735 | 2e-24 | 640 - 699 | 100 | 60 / 60 | plus | ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770 |
| MLOC | MLOC_75773.1 | 667 | 2e-24 | 483 - 542 | 100 | 60 / 60 | minus | ABC01036 |
| JLOC1 | JLOC1_50539.1 | 366 | 8e-25 | 182 - 241 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01069 | 725 | 3e-25 | 623 - 682 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01036 | 717 | 3e-25 | 628 - 687 | 100 | 60 / 60 | plus | ABC01036 |
| Harvest21 | ABC34415 | 373 | 1e-23 | 22 - 81 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_13683 | 730 | 3e-25 | 628 - 687 | 100 | 60 / 60 | plus |
Contig Sequence (730 bp)
>U35_13683 730 Hv_44K_v2 GCATCCCGCCGCCCCCGCCCAAACCCCAGCGCGCCGCCGCCACCGTCGCCGCCGCAGCGC GCGGAGGCGACCACCCCACCGCCGCCAAGATGCAGATCTTCGTGAAGACCCTGACGGGCA AGACCATCACGCTGGAGGTGGAGTCGTCGGACACCATCGACAACGTCAAGGCCAAGATCC AGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCG AGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGC TCCGACTCCGCGGTGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGC AAAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGACGACG CCACCGGCAAGGTAACCAGGCTCAGGAAGGAGTGCCCCAACGCCGACTGCGGTGCCGGGA CCTTCATGGCCAACCACTTCGACCGCCACTACTGCGGCAAGTGCGGACTCACCTATGTCT ACAACCAGAAGGCTTAGAACTGGCCTGTGTTTGCTCTGCTCTTTTACCTATCGCGAATAG AACTCATTTATGTGTCCAGTTTGTCTTTGAAAACTGAAACCTTGGAGTAATATGTTGTGT TTCCTGGATATTTGATCGCCTATTGCTAAAAAAAAAAAAAAAAAAAAAGTTTTAAAAAAA AAAAAAAAAA
Homology of Contig U35_13683 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g06770.1 | 156 | 3e-80 | protein|40S ribosomal protein S27a, putative, expressed |
| Brachypodium v1_2 | Bradi2g12280.1 | 156 | 5e-81 | |
| Arabidopsis v10 | AT2G47110.1 | 157 | 5e-72 | | Symbols: UBQ6 | ubiquitin 6 | chr2:19344701-19345174 FORWARD LENGTH=157 |