Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU6Hr1G000280	96.0	+	+	4933	-206	Containing

Transcripts from Gene BART1_0-u41655

Transcript	Length(bp)	Description
BART1_0-u41655.001	2845	2845 bp MSTRG.41655.1 MSTRG.41655
BART1_0-u41655.002	2889	2889 bp MSTRG.41655.2 MSTRG.41655
BART1_0-u41655.003	2864	2864 bp MSTRG.41655.3 MSTRG.41655
BART1_0-u41655.004	2895	2895 bp MSTRG.41655.4 MSTRG.41655
BART1_0-u41655.005	2766	2766 bp MSTRG.41655.5 MSTRG.41655
BART1_0-u41655.006	2743	2743 bp MSTRG.41655.6 MSTRG.41655
BART1_0-u41655.007	2676	2676 bp MSTRG.41655.7 MSTRG.41655
BART1_0-u41655.008	2824	2824 bp MSTRG.41655.8 MSTRG.41655
BART1_0-u41655.009	2715	2715 bp MSTRG.41655.9 MSTRG.41655
BART1_0-u41655.010	2480	2480 bp MSTRG.41655.10 MSTRG.41655
BART1_0-u41655.011	2584	2584 bp MSTRG.41655.11 MSTRG.41655
BART1_0-u41655.012	2405	2405 bp MSTRG.41655.12 MSTRG.41655
BART1_0-u41655.013	2594	2594 bp MSTRG.41655.13 MSTRG.41655
BART1_0-u41655.014	2446	2446 bp MSTRG.41655.14 MSTRG.41655
BART1_0-u41655.015	2321	2321 bp MSTRG.41655.15 MSTRG.41655
BART1_0-u41655.016	2595	2595 bp MSTRG.41655.16 MSTRG.41655
BART1_0-u41655.017	2639	2639 bp MSTRG.41655.17 MSTRG.41655
BART1_0-u41655.018	2430	2430 bp MSTRG.41655.18 MSTRG.41655
BART1_0-u41655.019	2994	2994 bp MSTRG.41655.19 MSTRG.41655
BART1_0-u41655.020	2846	2846 bp MSTRG.41655.20 MSTRG.41655
BART1_0-u41655.021	1937	1937 bp MSTRG.41655.21 MSTRG.41655
BART1_0-u41655.022	2850	2850 bp MSTRG.41655.22 MSTRG.41655
BART1_0-u41655.023	2082	2082 bp MSTRG.41655.23 MSTRG.41655
BART1_0-u41655.024	2225	2225 bp MSTRG.41655.24 MSTRG.41655
BART1_0-u41655.025	2712	2712 bp MSTRG.41655.25 MSTRG.41655
BART1_0-u41655.026	2681	2681 bp MSTRG.41655.26 MSTRG.41655
BART1_0-u41655.027	2325	2325 bp MSTRG.41655.27 MSTRG.41655
BART1_0-u41655.028	2378	2378 bp MSTRG.41655.28 MSTRG.41655
BART1_0-u41655.029	2616	2616 bp MSTRG.41655.29 MSTRG.41655
BART1_0-u41655.030	2303	2303 bp MSTRG.41655.30 MSTRG.41655
BART1_0-u41655.031	2438	2438 bp MSTRG.41655.31 MSTRG.41655
BART1_0-u41655.032	2421	2421 bp MSTRG.41655.32 MSTRG.41655
BART1_0-u41655.033	2439	2439 bp MSTRG.41655.33 MSTRG.41655
BART1_0-u41655.034	1512	1512 bp MSTRG.41655.34 MSTRG.41655

Exon Structure of BART1_0-u41655

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os10g04700.1	+1	6e-63	220	157/390 (40%)	protein|OsFBX361 - F-box domain containing protein, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi3g00580.1.p	+1	2e-87	287	173/382 (45%)	pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1

GO Annotation

There is no GO annotation for this gene

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons