- Transcript BART1_0-u41655.028
- Transcript IDBART1_0-u41655.028
- Gene IDBART1_0-u41655
Barley RTD
Exon Structure of BART1_0-u41655.028
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707435 | 707361 | + |
| chr6H | 2 | 707678 | 707609 | + |
| chr6H | 3 | 708353 | 708300 | + |
| chr6H | 4 | 709178 | 708511 | + |
| chr6H | 5 | 709652 | 709277 | + |
| chr6H | 6 | 710469 | 710377 | + |
| chr6H | 7 | 711410 | 710916 | + |
| chr6H | 8 | 712086 | 711540 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0.193196 | 0.943864 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0.974808 | 0.984422 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0.000025927 |
| morex | NOD | 0 | 0 | 0.350954 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0.322093 | 0 | 0 |
| morex | CAR15 | 0.323274 | 0.0204908 | 0.501931 |
| morex | LEM | 0.0848047 | 0 | 0.00000000235597 |
| morex | LOD | 0 | 1.39033 | 0.538506 |
| morex | PAL | 0 | 0 | 0.921894 |
| morex | SEN | 0.743917 | 0.600988 | 1.10733 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g10980.1 | +3 | 4e-44 | 159 | 91/206 (44%) | protein|OsFBX379 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +3 | 2e-59 | 170 | 101/212 (48%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2378 bp)
>BART1_0-u41655.028 2378 150831_barley_pseudomolecules TGGACAGAAAGGAGGAGCGGCGCCGCCGGCGACCTCCCCTCACCCCGCCGCCCCGTCCCC GTCGGTCCGGTCGAGCGGCGCAGAGAGAGGGAGAGGAGCGGGTGGCGCCGACGGATCCCG CCGAGGCTCCCCAAGGCGGCCCATGCAGTGGAGAGAGAGGAGGGCTGATGGGTCCTGCTG AGGTTCCCCAAATCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGCGTGTACGGCAGGA AGCTGTGGCGCTCCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTTGCCGAGATCCTCG TCCGTCTCTCTTCGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAAGCGCTGGC GCAACATCCTCTCCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCACCACCGGAAGCCTC CTCTGCTCGGCTTCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTCATGGACTCGCCCG ACCGTATCACTGCTGCCTGCTTCTCCATGCCCAAGAGAAACACACCCTACAACGACCATA GAGAATACATGGGCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAGCAAGAGCGCAAGA CCTTCGTGTGGGACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTTCCACCCGGGCTCG ATGACGCCTTTACAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTGTGTGCTGATGCTG AAGATGGGCATGTGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTGGTCTTGGTCTGCT GCGGTGGATACAATACACAGGCATTTTGCTCTGTCTATGACTCGGTATCTGGTGTTTGGG GAGGTGTTTTCTCGACCGCGATATCAAAGCCTTCATGTGATCGAGAAGCCGGCATACTAC TATGTTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTTGGCCTTGCT GTTTTGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGATGGCGTCGTC GGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAAATGGATTCT GTACGTTTCGTCGGGTATGATGAGGACACAAATGTGATTGTTCTCACTTCAATGACTGGC AACTTCACACTCCAGCTTGACTCGATGCAGATCAAACATATTGTTAAAAGAAACAACATA TGTTACGACCCGTTTTATCCCTACACCAATTTCTATACTACAGCTAGGCAAGGCAACTTG GCGGGAAGGGATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGCTACCT TGGTCGAATAATTTAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCATGGCTA GTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTGCAGTG AAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGTAGCCT GTTGGATCCTCTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGTCTCCT CTATGTTGTAGGGTCGTGGTCCGTGAATTGAATTTATCGGGTTTAATCATCCGAACTCTT ATATATTTGTGTGCCTAGTGACTTGTCGAGTTGGTTCGGTTAATGCTTTGCTCTGTGATG CGAGGTACTAGCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACTTTACAGAGTTTC TTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATAGTGCTGGTCACA TCACCACTTGCAGCAGAGGCAGACAATGCTTCTTCAGTTGGATTTCCGGATTGCAATGCT GGCTCTTTCTTGGAGGAGACAAGTTAAAAAATGTTGTCGGTTTTGGTTTCAACTTCAAAG AGTGTTGTGACTTGGCTCTTAATCAGAAGAGTTGTGAGATTTTATTTGAACTTTGTTTGA CTGGATAGAATTACTGATTTTTCCTTAATTGCTTGTCCTATTCTGGGTCTGTCATAGAGA ATTTTCTTGTCCTGAGTTACATTGAAGATATTTTCCAGATCTTGGACTTGCCATTCCCGA TACTTGTCCAATAAGTCAGCCCTCCAGGAAAAACACAGACTACATTGGCCTGGCGAGAGA GCCAACCGGTGATTGCCACAGACCACATTGGTCTGGCGAGTTAGCCAACCGGTGATTGCC ACGACGTTTGTTTTTCTTGGGACCGCACCTTGGTTTCTTGGGACCGCACCTTGGCTCCTG GGGCTACATGTGCATAGGGAAAATGCTGTCTTGGTGGTTGTTGCTGTCAAAACCGAAATG TTTGGCCATGATATTCAGTATTTTTAACATAGTTTCAG
Protein Sequence (333 aa)
>BART1_0-u41655.028 333 150831_barley_pseudomolecules DRKEERRRRRPPLTPPPRPRRSGRAAQREGEERVAPTDPAEAPQGGPCSGERGGLMGPAE VPQIQWAGPIPSSPRVYGRKLWRSVSKVLGNDNLLAEILVRLSSKPSSLPRASAVCKRWR NILSDPEFLKRFRKHHRKPPLLGFFEGYANRFTPVMDSPDRITAACFSMPKRNTPYNDHR EYMGCRHGLAVLVNKQERKTFVWDPLTGRQHSVAFPPGLDDAFTGNFCMWRGAVLCADAE DGHVHGDCFSSPFKLVLVCCGGYNTQAFCSVYDSVSGVWGGVFSTAISKPSCDREAGILL CYRRVFSALTDGGWWTWPCCFVGPDHPIVGEEI