- Transcript BART1_0-u41655.021
- Transcript IDBART1_0-u41655.021
- Gene IDBART1_0-u41655
Barley RTD
Exon Structure of BART1_0-u41655.021
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707435 | 707333 | + |
| chr6H | 2 | 707678 | 707609 | + |
| chr6H | 3 | 708353 | 708300 | + |
| chr6H | 4 | 709503 | 708511 | + |
| chr6H | 5 | 709652 | 709580 | + |
| chr6H | 6 | 710469 | 710377 | + |
| chr6H | 7 | 711466 | 710916 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.57086 | 0 | 0.822144 |
| morex | ETI | 1.43831 | 3.40587 | 2.84263 |
| morex | LEA | 0.547662 | 0.597119 | 2.27811 |
| morex | EPI | 0 | 0 | 0.246672 |
| morex | ROO | 1.08479 | 1.15741 | 1.94909 |
| morex | ROO2 | 4.23807 | 2.27839 | 3.71025 |
| morex | NOD | 0 | 1.31773 | 3.76526 |
| morex | RAC | 4.86383 | 5.57065 | 5.82519 |
| morex | INF1 | 0.921374 | 4.08564 | 5.10015 |
| morex | INF2 | 8.3649 | 9.4883 | 11.5463 |
| morex | CAR5 | 14.2453 | 13.8448 | 11.6351 |
| morex | CAR15 | 2.65591 | 1.60235 | 4.39544 |
| morex | LEM | 3.98116 | 2.84442 | 3.53877 |
| morex | LOD | 5.23919 | 5.07536 | 3.52813 |
| morex | PAL | 1.91137 | 2.98071 | 1.32095 |
| morex | SEN | 1.35721 | 0.8041 | 1.85434 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g04700.1 | +1 | 1e-54 | 192 | 134/321 (42%) | protein|OsFBX361 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +1 | 3e-76 | 250 | 152/322 (47%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1937 bp)
>BART1_0-u41655.021 1937 150831_barley_pseudomolecules CTCTACACTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGGCGCCGCCGGCGA CCTCCCCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGCGGCGCAGAGAGAGGGA GAGGAGCGGGTGGCGCCGACGGATCCCGCCGAGGCTCCCCAAGGCGGCCCATGCAGTGGA GAGAGAGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCAAATCCAATGGGCCGGCCCCATT CCCAGCTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCGCTCCGTGTCCAAGGTGCTCGGC AACGACAATCTCCTTGCCGAGATCCTCGTCCGTCTCTCTTCGAAGCCGTCCTCGCTCCCC CGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAACATCCTCTCCGACCCCGAGTTCCTCAAA CGCTTCCGCAAGCACCACCGGAAGCCTCCTCTGCTCGGCTTCTTTGAAGGTTATGCTAAC CGCTTCACCCCTGTCATGGACTCGCCCGACCGTATCACTGCTGCCTGCTTCTCCATGCCC AAGAGAAACACACCCTACAACGACCATAGAGAATACATGGGCTGCCGCCATGGCCTTGCT GTCCTGGTCAACAAGCAAGAGCGCAAGACCTTCGTGTGGGACCCTCTCACTGGCCGACAG CACAGCGTGGCTTTTCCACCCGGGCTCGATGACGCCTTTACAGGGAATTTCTGTATGTGG CGCGGCGCGGTGTTGTGTGCTGATGCTGAAGATGGGCATGTGCACGGAGATTGCTTCTCG AGTCCGTTTAAATTGGTCTTGGTCTGCTGCGGTGGATACAATACACAGGCATTTTGCTCT GTCTATGACTCGGTATCTGGTGTTTGGGGAGGTGTTTTCTCGACCGCGATATCAAGTATA ATTTCTATGTTAAGGCCCAGCATCCTAGTTGGTAATACAATTTGCTGGTTGATTTCTGGA GGTGATATCCTTGTGTTTGACTTCGAATGTCAGAGCCTTCATGTGATCGAGAAGCCGGCA TACTACTATGTTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTTGGC CTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGATGGC GTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAAATG GATTCTGTACGTTTCGTCGGATCAAACATATTGTTAAAAGAAACAACATATGTTACGACC CGTTTTATCCCTACACCAATTTCTATACTACAGCTAGGCAAGGCAACTTGGCGGGAAGGG ATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGCTACCTTGGTCGAATA ATTTAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCATGGCTAGTTGGCGCAG GGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTGCAGTGAAGTTCTTCT TCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGTAGCCTGTTGGATCCT CTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGTCTCCTCTATGTTGTA GGGTCGTGGTCCGTGAATTGAATTTATCGGGTTTAATCATCCGAACTCTTATATATTTGT GTGCCTAGTGACTTGTCGAGTTGGTTCGGTTAATGCTTTGCTCTGTGATGCGAGGTACTA GCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACTTTACAGAGTTTCTTTGTGAAGT CCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATAGTGCTGGTCACATCACCACTTG CAGCAGAGGCAGACAATGCTTGTATGTGCCCGGTTTTACTGCCCAGTTTAGCTTTAGTAA TTTCAAAAGTATCCCCT
Protein Sequence (461 aa)
>BART1_0-u41655.021 461 150831_barley_pseudomolecules LYTPLRSSRMDRKEERRRRRPPLTPPPRPRRSGRAAQREGEERVAPTDPAEAPQGGPCSG ERGGLMGPAEVPQIQWAGPIPSSPRVYGRKLWRSVSKVLGNDNLLAEILVRLSSKPSSLP RASAVCKRWRNILSDPEFLKRFRKHHRKPPLLGFFEGYANRFTPVMDSPDRITAACFSMP KRNTPYNDHREYMGCRHGLAVLVNKQERKTFVWDPLTGRQHSVAFPPGLDDAFTGNFCMW RGAVLCADAEDGHVHGDCFSSPFKLVLVCCGGYNTQAFCSVYDSVSGVWGGVFSTAISSI ISMLRPSILVGNTICWLISGGDILVFDFECQSLHVIEKPAYYYVTDGCFQLLRMEGGGLG LAVLLGLTIQLWERKSNCDGVVGWVLLQKTIPLEGMFPKMDSVRFVGSNILLKETTYVTT RFIPTPISILQLGKATWREGMDLELIVIGPDLLTCYLGRII