- Transcript BART1_0-u41655.014
- Transcript IDBART1_0-u41655.014
- Gene IDBART1_0-u41655
Barley RTD
Exon Structure of BART1_0-u41655.014
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707435 | 707328 | + |
| chr6H | 2 | 708353 | 708300 | + |
| chr6H | 3 | 709652 | 708511 | + |
| chr6H | 4 | 710469 | 710381 | + |
| chr6H | 5 | 711410 | 710916 | + |
| chr6H | 6 | 712097 | 711540 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.00000142308 | 1.35629 | 1.2136 |
| morex | ETI | 0 | 0 | 0.000000159119 |
| morex | LEA | 0 | 1.56851 | 2.11536 |
| morex | EPI | 0.000547996 | 0 | 0.00888543 |
| morex | ROO | 0.440225 | 0.0497826 | 0.522633 |
| morex | ROO2 | 0.000164975 | 0 | 0 |
| morex | NOD | 2.39607 | 1.14102 | 1.4407 |
| morex | RAC | 0 | 0.00000000112888 | 0 |
| morex | INF1 | 0.0316786 | 2.15561 | 0.0207799 |
| morex | INF2 | 0 | 1.59731 | 0 |
| morex | CAR5 | 0.304169 | 0.00128174 | 3.36753 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 1.00855 | 0.00000000526129 | 0.859005 |
| morex | LOD | 0.618112 | 0.0291867 | 0 |
| morex | PAL | 1.17923 | 1.52416 | 0.588649 |
| morex | SEN | 0 | 0.277349 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g04700.1 | +2 | 2e-63 | 219 | 153/372 (41%) | protein|OsFBX361 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +2 | 1e-88 | 286 | 173/382 (45%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2446 bp)
>BART1_0-u41655.014 2446 150831_barley_pseudomolecules CCCCACTCTACACTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGGCGCCGCC GGCGACCTCCCCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGCAGTGGAGAGAG AGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCAAATCCAATGGGCCGGCCCCATTCCCAG CTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCGCTCCGTGTCCAAGGTGCTCGGCAACGA CAATCTCCTTGCCGAGATCCTCGTCCGTCTCTCTTCGAAGCCGTCCTCGCTCCCCCGCGC GTCCGCCGTGTGCAAGCGCTGGCGCAACATCCTCTCCGACCCCGAGTTCCTCAAACGCTT CCGCAAGCACCACCGGAAGCCTCCTCTGCTCGGCTTCTTTGAAGGTTATGCTAACCGCTT CACCCCTGTCATGGACTCGCCCGACCGTATCACTGCTGCCTGCTTCTCCATGCCCAAGAG AAACACACCCTACAACGACCATAGAGAATACATGGGCTGCCGCCATGGCCTTGCTGTCCT GGTCAACAAGCAAGAGCGCAAGACCTTCGTGTGGGACCCTCTCACTGGCCGACAGCACAG CGTGGCTTTTCCACCCGGGCTCGATGACGCCTTTACAGGGAATTTCTGTATGTGGCGCGG CGCGGTGTTGTGTGCTGATGCTGAAGATGGGCATGTGCACGGAGATTGCTTCTCGAGTCC GTTTAAATTGGTCTTGGTCTGCTGCGGTGGATACAATACACAGGCATTTTGCTCTGTCTA TGACTCGGTATCTGGTGTTTGGGGAGGTGTTTTCTCGACCGCGATATCAAGTATAATTTC TATGTTAAGGCCCAGCATCCTAGTTGGTAATACAATTTGCTGGTTGATTTCTGGAGGTGA TATCCTTGTGTTTGACTTCGAATGTCAGAGCCTTCATGTGATCGAGAAGCCGGCATACTA CTATGTTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTTGGCCTTGC TGTTTTGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGATGGCGTCGT CGGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAAATGGATTC TGTACGTTTCGTCGGGTATGATGAGGACACAAATGTGATTGTTCTCACTTCAATGACTGG CAACTTCACACTCCAGCTTGACTCGATGCAGATCAAACATATTGTTAAAAGAAACAACAT ATGTTACGACCCGTTTTATCCCTACACCAATTTCTATACTACAGGCAAGGCAACTTGGCG GGAAGGGATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGCTACCTTGG TCGAATAATTTAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCATGGCTAGTT GGCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTGCAGTGAAG TTCTTCTTCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGTAGCCTGTT GGATCCTCTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGTCTCCTCTA TGTTGTAGGGTCGTGGTCCGTGAATTGAATTTATCGGGTTTAATCATCCGAACTCTTATA TATTTGTGTGCCTAGTGACTTGTCGAGTTGGTTCGGTTAATGCTTTGCTCTGTGATGCGA GGTACTAGCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACTTTACAGAGTTTCTTT GTGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATAGTGCTGGTCACATCA CCACTTGCAGCAGAGGCAGACAATGCTTCTTCAGTTGGATTTCCGGATTGCAATGCTGGC TCTTTCTTGGAGGAGACAAGTTAAAAAATGTTGTCGGTTTTGGTTTCAACTTCAAAGAGT GTTGTGACTTGGCTCTTAATCAGAAGAGTTGTGAGATTTTATTTGAACTTTGTTTGACTG GATAGAATTACTGATTTTTCCTTAATTGCTTGTCCTATTCTGGGTCTGTCATAGAGAATT TTCTTGTCCTGAGTTACATTGAAGATATTTTCCAGATCTTGGACTTGCCATTCCCGATAC TTGTCCAATAAGTCAGCCCTCCAGGAAAAACACAGACTACATTGGCCTGGCGAGAGAGCC AACCGGTGATTGCCACAGACCACATTGGTCTGGCGAGTTAGCCAACCGGTGATTGCCACG ACGTTTGTTTTTCTTGGGACCGCACCTTGGTTTCTTGGGACCGCACCTTGGCTCCTGGGG CTACATGTGCATAGGGAAAATGCTGTCTTGGTGGTTGTTGCTGTCAAAACCGAAATGTTT GGCCATGATATTCAGTATTTTTAACATAGTTTCAGTTATCTTTGAC
Protein Sequence (463 aa)
>BART1_0-u41655.014 463 150831_barley_pseudomolecules PTLHSSQELADGQKGGAAPPATSPHPAAPSPSVRSSSGERGGLMGPAEVPQIQWAGPIPS SPRVYGRKLWRSVSKVLGNDNLLAEILVRLSSKPSSLPRASAVCKRWRNILSDPEFLKRF RKHHRKPPLLGFFEGYANRFTPVMDSPDRITAACFSMPKRNTPYNDHREYMGCRHGLAVL VNKQERKTFVWDPLTGRQHSVAFPPGLDDAFTGNFCMWRGAVLCADAEDGHVHGDCFSSP FKLVLVCCGGYNTQAFCSVYDSVSGVWGGVFSTAISSIISMLRPSILVGNTICWLISGGD ILVFDFECQSLHVIEKPAYYYVTDGCFQLLRMEGGGLGLAVLLGLTIQLWERKSNCDGVV GWVLLQKTIPLEGMFPKMDSVRFVGYDEDTNVIVLTSMTGNFTLQLDSMQIKHIVKRNNI CYDPFYPYTNFYTTGKATWREGMDLELIVIGPDLLTCYLGRII