- Transcript BART1_0-u41655.033
- Transcript IDBART1_0-u41655.033
- Gene IDBART1_0-u41655
Barley RTD
Exon Structure of BART1_0-u41655.033
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707868 | 707776 | + |
| chr6H | 2 | 708353 | 708300 | + |
| chr6H | 3 | 709178 | 708511 | + |
| chr6H | 4 | 709652 | 709277 | + |
| chr6H | 5 | 710469 | 710381 | + |
| chr6H | 6 | 712074 | 710916 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0655568 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0.155626 | 0.072898 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0.00348012 | 0 |
| morex | INF1 | 0.491226 | 0 | 0 |
| morex | INF2 | 0.273545 | 0 | 0.816086 |
| morex | CAR5 | 0 | 1.74554 | 0 |
| morex | CAR15 | 0 | 0.000189098 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0.401566 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.469127 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g10980.1 | +2 | 8e-44 | 157 | 91/209 (44%) | protein|OsFBX379 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +2 | 2e-59 | 170 | 101/212 (48%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2439 bp)
>BART1_0-u41655.033 2439 150831_barley_pseudomolecules TCGATTAATGCTTGCATCTCTGTGTTATGAGGTGGATGGATGGACAAGAAGCAGTAGGCT CTGGCACTTTACACGGTTTCTTTGTCAAGTCTTCAGTGGAGAGAGAGGAGGGCTGATGGG TCCTGCTGAGGTTCCCCAAATCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGCGTGTA CGGCAGGAAGCTGTGGCGCTCCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTTGCCGA GATCCTCGTCCGTCTCTCTTCGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAA GCGCTGGCGCAACATCCTCTCCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCACCACCG GAAGCCTCCTCTGCTCGGCTTCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTCATGGA CTCGCCCGACCGTATCACTGCTGCCTGCTTCTCCATGCCCAAGAGAAACACACCCTACAA CGACCATAGAGAATACATGGGCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAGCAAGA GCGCAAGACCTTCGTGTGGGACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTTCCACC CGGGCTCGATGACGCCTTTACAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTGTGTGC TGATGCTGAAGATGGGCATGTGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTGGTCTT GGTCTGCTGCGGTGGATACAATACACAGGCATTTTGCTCTGTCTATGACTCGGTATCTGG TGTTTGGGGAGGTGTTTTCTCGACCGCGATATCAAAGCCTTCATGTGATCGAGAAGCCGG CATACTACTATGTTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTTG GCCTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGATG GCGTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAAA TGGATTCTGTACGTTTCGTCGGGTATGATGAGGACACAAATGTGATTGTTCTCACTTCAA TGACTGGCAACTTCACACTCCAGCTTGACTCGATGCAGATCAAACATATTGTTAAAAGAA ACAACATATGTTACGACCCGTTTTATCCCTACACCAATTTCTATACTACAGGCAAGGCAA CTTGGCGGGAAGGGATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGCT ACCTTGGTCGAATAATTTAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCATG GCTAGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTGC AGTGAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGTA GCCTGTTGGATCCTCTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGTC TCCTCTATGTTGTAGGGTCGTGGTCCGTGAATTGAATTTATCGGGTTTAATCATCCGAAC TCTTATATATTTGTGTGCCTAGTGACTTGTCGAGTTGGTTCGGTTAATGCTTTGCTCTGT GATGCGAGGTACTAGCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACTTTACAGAG TTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATAGTGCTGGT CACATCACCACTTGCAGCAGAGGCAGACAATGCTTGTATGTGCCCGGTTTTACTGCCCAG TTTAGCTTTAGTAATTTCAAAAGTATCCCCTTCTTGAAGCATATACACTTTCATATTCCG GTGTCTGGATATTTGCTGCTGATAACTTGTCATGTTTATTTTAGCTTCAGTTGGATTTCC GGATTGCAATGCTGGCTCTTTCTTGGAGGAGACAAGTTAAAAAATGTTGTCGGTTTTGGT TTCAACTTCAAAGAGTGTTGTGACTTGGCTCTTAATCAGAAGAGTTGTGAGATTTTATTT GAACTTTGTTTGACTGGATAGAATTACTGATTTTTCCTTAATTGCTTGTCCTATTCTGGG TCTGTCATAGAGAATTTTCTTGTCCTGAGTTACATTGAAGATATTTTCCAGATCTTGGAC TTGCCATTCCCGATACTTGTCCAATAAGTCAGCCCTCCAGGAAAAACACAGACTACATTG GCCTGGCGAGAGAGCCAACCGGTGATTGCCACAGACCACATTGGTCTGGCGAGTTAGCCA ACCGGTGATTGCCACGACGTTTGTTTTTCTTGGGACCGCACCTTGGTTTCTTGGGACCGC ACCTTGGCTCCTGGGGCTACATGTGCATAGGGAAAATGCTGTCTTGGTGGTTGTTGCTGT CAAAACCGAAATGTTTGGCCATGATATTCAGTATTTTTA
Protein Sequence (224 aa)
>BART1_0-u41655.033 224 150831_barley_pseudomolecules MPIFSISTQHRAAPHTEIPCKGVIEPGWKSHAVLSASERVPHEGLALLLVDQDSKAMAAA HVFSMVVVGCVSLGHGEAGSSDTVGRVHDRGEAVSITFKEAEQRRLPVVLAEAFEELGVG EDVAPALAHGGRAGERGRLRRETDEDLGKEIVVAEHLGHGAPQLPAVHARRAGNGAGPLD LGNLSRTHQPSSLSTEDLTKKPCKVPEPTASCPSIHLITQRCKH