Exon Structure of BART1_0-u41655.027

ChromosomeExonStartStopDirection
chr6H1707435707355+
chr6H2708353708300+
chr6H3709178708511+
chr6H4709652709277+
chr6H5710469710377+
chr6H6711410710916+
chr6H7712097711540+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB000
morexETI000
morexLEA000
morexEPI0.05120530.6860550
morexROO000
morexROO2000
morexNOD000
morexRAC000
morexINF1000
morexINF2000
morexCAR5000
morexCAR15000
morexLEM000
morexLOD000
morexPAL000
morexSEN00.4266180



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g10980.1 +2 5e-44 158 91/209 (44%) protein|OsFBX379 - F-box domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi3g00580.1.p +2 2e-59 170 101/212 (48%) pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2325 bp)

>BART1_0-u41655.027 2325 150831_barley_pseudomolecules
CGCGGATGGACAGAAAGGAGGAGCGGCGCCGCCGGCGACCTCCCCTCACCCCGCCGCCCC
GTCCCCGTCGGTCCGGTCGAGCAGTGGAGAGAGAGGAGGGCTGATGGGTCCTGCTGAGGT
TCCCCAAATCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGCGTGTACGGCAGGAAGCT
GTGGCGCTCCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTTGCCGAGATCCTCGTCCG
TCTCTCTTCGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAA
CATCCTCTCCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCACCACCGGAAGCCTCCTCT
GCTCGGCTTCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTCATGGACTCGCCCGACCG
TATCACTGCTGCCTGCTTCTCCATGCCCAAGAGAAACACACCCTACAACGACCATAGAGA
ATACATGGGCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAGCAAGAGCGCAAGACCTT
CGTGTGGGACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTTCCACCCGGGCTCGATGA
CGCCTTTACAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTGTGTGCTGATGCTGAAGA
TGGGCATGTGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTGGTCTTGGTCTGCTGCGG
TGGATACAATACACAGGCATTTTGCTCTGTCTATGACTCGGTATCTGGTGTTTGGGGAGG
TGTTTTCTCGACCGCGATATCAAAGCCTTCATGTGATCGAGAAGCCGGCATACTACTATG
TTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTTGGCCTTGCTGTTT
TGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGATGGCGTCGTCGGGT
GGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAAATGGATTCTGTAC
GTTTCGTCGGGTATGATGAGGACACAAATGTGATTGTTCTCACTTCAATGACTGGCAACT
TCACACTCCAGCTTGACTCGATGCAGATCAAACATATTGTTAAAAGAAACAACATATGTT
ACGACCCGTTTTATCCCTACACCAATTTCTATACTACAGCTAGGCAAGGCAACTTGGCGG
GAAGGGATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGCTACCTTGGT
CGAATAATTTAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCATGGCTAGTTG
GCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTGCAGTGAAGT
TCTTCTTCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGTAGCCTGTTG
GATCCTCTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGTCTCCTCTAT
GTTGTAGGGTCGTGGTCCGTGAATTGAATTTATCGGGTTTAATCATCCGAACTCTTATAT
ATTTGTGTGCCTAGTGACTTGTCGAGTTGGTTCGGTTAATGCTTTGCTCTGTGATGCGAG
GTACTAGCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACTTTACAGAGTTTCTTTG
TGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATAGTGCTGGTCACATCAC
CACTTGCAGCAGAGGCAGACAATGCTTCTTCAGTTGGATTTCCGGATTGCAATGCTGGCT
CTTTCTTGGAGGAGACAAGTTAAAAAATGTTGTCGGTTTTGGTTTCAACTTCAAAGAGTG
TTGTGACTTGGCTCTTAATCAGAAGAGTTGTGAGATTTTATTTGAACTTTGTTTGACTGG
ATAGAATTACTGATTTTTCCTTAATTGCTTGTCCTATTCTGGGTCTGTCATAGAGAATTT
TCTTGTCCTGAGTTACATTGAAGATATTTTCCAGATCTTGGACTTGCCATTCCCGATACT
TGTCCAATAAGTCAGCCCTCCAGGAAAAACACAGACTACATTGGCCTGGCGAGAGAGCCA
ACCGGTGATTGCCACAGACCACATTGGTCTGGCGAGTTAGCCAACCGGTGATTGCCACGA
CGTTTGTTTTTCTTGGGACCGCACCTTGGTTTCTTGGGACCGCACCTTGGCTCCTGGGGC
TACATGTGCATAGGGAAAATGCTGTCTTGGTGGTTGTTGCTGTCAAAACCGAAATGTTTG
GCCATGATATTCAGTATTTTTAACATAGTTTCAGTTATCTTTGAC



Protein Sequence (312 aa)

>BART1_0-u41655.027 312 150831_barley_pseudomolecules
ADGQKGGAAPPATSPHPAAPSPSVRSSSGERGGLMGPAEVPQIQWAGPIPSSPRVYGRKL
WRSVSKVLGNDNLLAEILVRLSSKPSSLPRASAVCKRWRNILSDPEFLKRFRKHHRKPPL
LGFFEGYANRFTPVMDSPDRITAACFSMPKRNTPYNDHREYMGCRHGLAVLVNKQERKTF
VWDPLTGRQHSVAFPPGLDDAFTGNFCMWRGAVLCADAEDGHVHGDCFSSPFKLVLVCCG
GYNTQAFCSVYDSVSGVWGGVFSTAISKPSCDREAGILLCYRRVFSALTDGGWWTWPCCF
VGPDHPIVGEEI