Exon Structure of BART1_0-u41655.018

ChromosomeExonStartStopDirection
chr6H1707435707330+
chr6H2707678707609+
chr6H3708353708300+
chr6H4709652708511+
chr6H5710469710381+
chr6H6711157710916+
chr6H7711410711271+
chr6H8712126711540+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB000
morexETI000
morexLEA000
morexEPI000
morexROO0.0000000037109700
morexROO20.00000043270.2735670
morexNOD0.00000079361100.0000000834557
morexRAC000
morexINF1000
morexINF200.000001295830
morexCAR5000
morexCAR15000
morexLEM000
morexLOD000
morexPAL000
morexSEN000



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g04700.1 +1 2e-63 219 152/372 (41%) protein|OsFBX361 - F-box domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi3g00580.1.p +1 2e-88 286 173/382 (45%) pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2430 bp)

>BART1_0-u41655.018 2430 150831_barley_pseudomolecules
CCACTCTACACTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGGCGCCGCCGG
CGACCTCCCCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGCGGCGCAGAGAGAG
GGAGAGGAGCGGGTGGCGCCGACGGATCCCGCCGAGGCTCCCCAAGGCGGCCCATGCAGT
GGAGAGAGAGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCAAATCCAATGGGCCGGCCCC
ATTCCCAGCTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCGCTCCGTGTCCAAGGTGCTC
GGCAACGACAATCTCCTTGCCGAGATCCTCGTCCGTCTCTCTTCGAAGCCGTCCTCGCTC
CCCCGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAACATCCTCTCCGACCCCGAGTTCCTC
AAACGCTTCCGCAAGCACCACCGGAAGCCTCCTCTGCTCGGCTTCTTTGAAGGTTATGCT
AACCGCTTCACCCCTGTCATGGACTCGCCCGACCGTATCACTGCTGCCTGCTTCTCCATG
CCCAAGAGAAACACACCCTACAACGACCATAGAGAATACATGGGCTGCCGCCATGGCCTT
GCTGTCCTGGTCAACAAGCAAGAGCGCAAGACCTTCGTGTGGGACCCTCTCACTGGCCGA
CAGCACAGCGTGGCTTTTCCACCCGGGCTCGATGACGCCTTTACAGGGAATTTCTGTATG
TGGCGCGGCGCGGTGTTGTGTGCTGATGCTGAAGATGGGCATGTGCACGGAGATTGCTTC
TCGAGTCCGTTTAAATTGGTCTTGGTCTGCTGCGGTGGATACAATACACAGGCATTTTGC
TCTGTCTATGACTCGGTATCTGGTGTTTGGGGAGGTGTTTTCTCGACCGCGATATCAAGT
ATAATTTCTATGTTAAGGCCCAGCATCCTAGTTGGTAATACAATTTGCTGGTTGATTTCT
GGAGGTGATATCCTTGTGTTTGACTTCGAATGTCAGAGCCTTCATGTGATCGAGAAGCCG
GCATACTACTATGTTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTT
GGCCTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGAT
GGCGTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAA
ATGGATTCTGTACGTTTCGTCGGGTATGATGAGGACACAAATGTGATTGTTCTCACTTCA
ATGACTGGCAACTTCACACTCCAGCTTGACTCGATGCAGATCAAACATATTGTTAAAAGA
AACAACATATGTTACGACCCGTTTTATCCCTACACCAATTTCTATACTACAGGCAAGGCA
ACTTGGCGGGAAGGGATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGC
TACCTTGGTCGAATAATTTAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCAT
GGCTAGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTG
CAGTGAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGT
AGCCTGTTGGATCCTCTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGT
CTCCTCTATGTTGTAGGGTCGTGCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACT
TTACAGAGTTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATA
GTGCTGGTCACATCACCACTTGCAGCAGAGGCAGACAATGCTTCTTCAGTTGGATTTCCG
GATTGCAATGCTGGCTCTTTCTTGGAGGAGACAAGTTAAAAAATGTTGTCGGTTTTGGTT
TCAACTTCAAAGAGTGTTGTGACTTGGCTCTTAATCAGAAGAGTTGTGAGATTTTATTTG
AACTTTGTTTGACTGGATAGAATTACTGATTTTTCCTTAATTGCTTGTCCTATTCTGGGT
CTGTCATAGAGAATTTTCTTGTCCTGAGTTACATTGAAGATATTTTCCAGATCTTGGACT
TGCCATTCCCGATACTTGTCCAATAAGTCAGCCCTCCAGGAAAAACACAGACTACATTGG
CCTGGCGAGAGAGCCAACCGGTGATTGCCACAGACCACATTGGTCTGGCGAGTTAGCCAA
CCGGTGATTGCCACGACGTTTGTTTTTCTTGGGACCGCACCTTGGTTTCTTGGGACCGCA
CCTTGGCTCCTGGGGCTACATGTGCATAGGGAAAATGCTGTCTTGGTGGTTGTTGCTGTC
AAAACCGAAATGTTTGGCCATGATATTCAGTATTTTTAACATAGTTTCAGTTATCTTTGA
CACAGTTTCAGTTCTATACGTTTCCATGCT



Protein Sequence (486 aa)

>BART1_0-u41655.018 486 150831_barley_pseudomolecules
PLYTPLRSSRMDRKEERRRRRPPLTPPPRPRRSGRAAQREGEERVAPTDPAEAPQGGPCS
GERGGLMGPAEVPQIQWAGPIPSSPRVYGRKLWRSVSKVLGNDNLLAEILVRLSSKPSSL
PRASAVCKRWRNILSDPEFLKRFRKHHRKPPLLGFFEGYANRFTPVMDSPDRITAACFSM
PKRNTPYNDHREYMGCRHGLAVLVNKQERKTFVWDPLTGRQHSVAFPPGLDDAFTGNFCM
WRGAVLCADAEDGHVHGDCFSSPFKLVLVCCGGYNTQAFCSVYDSVSGVWGGVFSTAISS
IISMLRPSILVGNTICWLISGGDILVFDFECQSLHVIEKPAYYYVTDGCFQLLRMEGGGL
GLAVLLGLTIQLWERKSNCDGVVGWVLLQKTIPLEGMFPKMDSVRFVGYDEDTNVIVLTS
MTGNFTLQLDSMQIKHIVKRNNICYDPFYPYTNFYTTGKATWREGMDLELIVIGPDLLTC
YLGRII