- Transcript BART1_0-u41655.018
- Transcript IDBART1_0-u41655.018
- Gene IDBART1_0-u41655
Exon Structure of BART1_0-u41655.018
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 707435 | 707330 | + |
chr6H | 2 | 707678 | 707609 | + |
chr6H | 3 | 708353 | 708300 | + |
chr6H | 4 | 709652 | 708511 | + |
chr6H | 5 | 710469 | 710381 | + |
chr6H | 6 | 711157 | 710916 | + |
chr6H | 7 | 711410 | 711271 | + |
chr6H | 8 | 712126 | 711540 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 0 |
morex | ETI | 0 | 0 | 0 |
morex | LEA | 0 | 0 | 0 |
morex | EPI | 0 | 0 | 0 |
morex | ROO | 0.00000000371097 | 0 | 0 |
morex | ROO2 | 0.0000004327 | 0.273567 | 0 |
morex | NOD | 0.000000793611 | 0 | 0.0000000834557 |
morex | RAC | 0 | 0 | 0 |
morex | INF1 | 0 | 0 | 0 |
morex | INF2 | 0 | 0.00000129583 | 0 |
morex | CAR5 | 0 | 0 | 0 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0 | 0 | 0 |
morex | LOD | 0 | 0 | 0 |
morex | PAL | 0 | 0 | 0 |
morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os10g04700.1 | +1 | 2e-63 | 219 | 152/372 (41%) | protein|OsFBX361 - F-box domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi3g00580.1.p | +1 | 2e-88 | 286 | 173/382 (45%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2430 bp)
>BART1_0-u41655.018 2430 150831_barley_pseudomolecules CCACTCTACACTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGGCGCCGCCGG CGACCTCCCCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGCGGCGCAGAGAGAG GGAGAGGAGCGGGTGGCGCCGACGGATCCCGCCGAGGCTCCCCAAGGCGGCCCATGCAGT GGAGAGAGAGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCAAATCCAATGGGCCGGCCCC ATTCCCAGCTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCGCTCCGTGTCCAAGGTGCTC GGCAACGACAATCTCCTTGCCGAGATCCTCGTCCGTCTCTCTTCGAAGCCGTCCTCGCTC CCCCGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAACATCCTCTCCGACCCCGAGTTCCTC AAACGCTTCCGCAAGCACCACCGGAAGCCTCCTCTGCTCGGCTTCTTTGAAGGTTATGCT AACCGCTTCACCCCTGTCATGGACTCGCCCGACCGTATCACTGCTGCCTGCTTCTCCATG CCCAAGAGAAACACACCCTACAACGACCATAGAGAATACATGGGCTGCCGCCATGGCCTT GCTGTCCTGGTCAACAAGCAAGAGCGCAAGACCTTCGTGTGGGACCCTCTCACTGGCCGA CAGCACAGCGTGGCTTTTCCACCCGGGCTCGATGACGCCTTTACAGGGAATTTCTGTATG TGGCGCGGCGCGGTGTTGTGTGCTGATGCTGAAGATGGGCATGTGCACGGAGATTGCTTC TCGAGTCCGTTTAAATTGGTCTTGGTCTGCTGCGGTGGATACAATACACAGGCATTTTGC TCTGTCTATGACTCGGTATCTGGTGTTTGGGGAGGTGTTTTCTCGACCGCGATATCAAGT ATAATTTCTATGTTAAGGCCCAGCATCCTAGTTGGTAATACAATTTGCTGGTTGATTTCT GGAGGTGATATCCTTGTGTTTGACTTCGAATGTCAGAGCCTTCATGTGATCGAGAAGCCG GCATACTACTATGTTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTT GGCCTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGAT GGCGTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAA ATGGATTCTGTACGTTTCGTCGGGTATGATGAGGACACAAATGTGATTGTTCTCACTTCA ATGACTGGCAACTTCACACTCCAGCTTGACTCGATGCAGATCAAACATATTGTTAAAAGA AACAACATATGTTACGACCCGTTTTATCCCTACACCAATTTCTATACTACAGGCAAGGCA ACTTGGCGGGAAGGGATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGC TACCTTGGTCGAATAATTTAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCAT GGCTAGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTG CAGTGAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGT AGCCTGTTGGATCCTCTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGT CTCCTCTATGTTGTAGGGTCGTGCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACT TTACAGAGTTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATA GTGCTGGTCACATCACCACTTGCAGCAGAGGCAGACAATGCTTCTTCAGTTGGATTTCCG GATTGCAATGCTGGCTCTTTCTTGGAGGAGACAAGTTAAAAAATGTTGTCGGTTTTGGTT TCAACTTCAAAGAGTGTTGTGACTTGGCTCTTAATCAGAAGAGTTGTGAGATTTTATTTG AACTTTGTTTGACTGGATAGAATTACTGATTTTTCCTTAATTGCTTGTCCTATTCTGGGT CTGTCATAGAGAATTTTCTTGTCCTGAGTTACATTGAAGATATTTTCCAGATCTTGGACT TGCCATTCCCGATACTTGTCCAATAAGTCAGCCCTCCAGGAAAAACACAGACTACATTGG CCTGGCGAGAGAGCCAACCGGTGATTGCCACAGACCACATTGGTCTGGCGAGTTAGCCAA CCGGTGATTGCCACGACGTTTGTTTTTCTTGGGACCGCACCTTGGTTTCTTGGGACCGCA CCTTGGCTCCTGGGGCTACATGTGCATAGGGAAAATGCTGTCTTGGTGGTTGTTGCTGTC AAAACCGAAATGTTTGGCCATGATATTCAGTATTTTTAACATAGTTTCAGTTATCTTTGA CACAGTTTCAGTTCTATACGTTTCCATGCT
Protein Sequence (486 aa)
>BART1_0-u41655.018 486 150831_barley_pseudomolecules PLYTPLRSSRMDRKEERRRRRPPLTPPPRPRRSGRAAQREGEERVAPTDPAEAPQGGPCS GERGGLMGPAEVPQIQWAGPIPSSPRVYGRKLWRSVSKVLGNDNLLAEILVRLSSKPSSL PRASAVCKRWRNILSDPEFLKRFRKHHRKPPLLGFFEGYANRFTPVMDSPDRITAACFSM PKRNTPYNDHREYMGCRHGLAVLVNKQERKTFVWDPLTGRQHSVAFPPGLDDAFTGNFCM WRGAVLCADAEDGHVHGDCFSSPFKLVLVCCGGYNTQAFCSVYDSVSGVWGGVFSTAISS IISMLRPSILVGNTICWLISGGDILVFDFECQSLHVIEKPAYYYVTDGCFQLLRMEGGGL GLAVLLGLTIQLWERKSNCDGVVGWVLLQKTIPLEGMFPKMDSVRFVGYDEDTNVIVLTS MTGNFTLQLDSMQIKHIVKRNNICYDPFYPYTNFYTTGKATWREGMDLELIVIGPDLLTC YLGRII