Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u4165596.0++4933-206Containing




Transcripts from Gene HORVU6Hr1G000280

TranscriptLength(bp)Description
HORVU6Hr1G000280.11619gene=HORVU6Hr1G000280 CDS=1-1311
HORVU6Hr1G000280.22334gene=HORVU6Hr1G000280 CDS=3-1436
HORVU6Hr1G000280.32439gene=HORVU6Hr1G000280 CDS=1-1488
HORVU6Hr1G000280.42509gene=HORVU6Hr1G000280 CDS=1-1395
HORVU6Hr1G000280.52527gene=HORVU6Hr1G000280 CDS=2-1387
HORVU6Hr1G000280.62017gene=HORVU6Hr1G000280 CDS=1-1365
HORVU6Hr1G000280.71446gene=HORVU6Hr1G000280 CDS=1-1446
HORVU6Hr1G000280.82605gene=HORVU6Hr1G000280 CDS=3-1448
HORVU6Hr1G000280.92380gene=HORVU6Hr1G000280 CDS=3-1004
HORVU6Hr1G000280.102427gene=HORVU6Hr1G000280 CDS=1-927
HORVU6Hr1G000280.112433gene=HORVU6Hr1G000280 CDS=1-1344
HORVU6Hr1G000280.121623gene=HORVU6Hr1G000280 CDS=1-1329
HORVU6Hr1G000280.131698gene=HORVU6Hr1G000280 CDS=440-1354
HORVU6Hr1G000280.141958gene=HORVU6Hr1G000280 CDS=2-1393
HORVU6Hr1G000280.151899gene=HORVU6Hr1G000280 CDS=3-1346
HORVU6Hr1G000280.161895gene=HORVU6Hr1G000280 CDS=366-1328
HORVU6Hr1G000280.172569gene=HORVU6Hr1G000280 CDS=3-1397
HORVU6Hr1G000280.182405gene=HORVU6Hr1G000280 CDS=2-1411
HORVU6Hr1G000280.192402gene=HORVU6Hr1G000280 CDS=432-1394
HORVU6Hr1G000280.202524gene=HORVU6Hr1G000280 CDS=2-1387
HORVU6Hr1G000280.212229gene=HORVU6Hr1G000280 CDS=297-1577
HORVU6Hr1G000280.222046gene=HORVU6Hr1G000280 CDS=247-1509
HORVU6Hr1G000280.231882gene=HORVU6Hr1G000280 CDS=3-1349
HORVU6Hr1G000280.241376gene=HORVU6Hr1G000280 CDS=2-568



Exon Structure of HORVU6Hr1G000280


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g04700.1 +3 7e-64 221 154/375 (41%) protein|OsFBX361 - F-box domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi3g00580.1.p +3 4e-88 286 173/382 (45%) pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons