- Transcript BART1_0-u41655.023
- Transcript IDBART1_0-u41655.023
- Gene IDBART1_0-u41655
Barley RTD
Exon Structure of BART1_0-u41655.023
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707435 | 707338 | + |
| chr6H | 2 | 708353 | 708300 | + |
| chr6H | 3 | 709652 | 708511 | + |
| chr6H | 4 | 710469 | 710377 | + |
| chr6H | 5 | 711410 | 710916 | + |
| chr6H | 6 | 711745 | 711546 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.13165 | 1.88555 | 1.35979 |
| morex | ETI | 3.92797 | 1.90064 | 2.3916 |
| morex | LEA | 2.21039 | 0.0000000483246 | 0 |
| morex | EPI | 0.928242 | 0.822324 | 1.51605 |
| morex | ROO | 1.99179 | 1.44201 | 0.278839 |
| morex | ROO2 | 3.44419 | 4.73185 | 4.16414 |
| morex | NOD | 1.17325 | 2.66186 | 1.67814 |
| morex | RAC | 5.06464 | 1.29878 | 2.28238 |
| morex | INF1 | 12.9898 | 7.20109 | 11.1615 |
| morex | INF2 | 18.3638 | 11.571 | 17.408 |
| morex | CAR5 | 11.4417 | 9.60106 | 11.0213 |
| morex | CAR15 | 4.90093 | 3.72296 | 5.80853 |
| morex | LEM | 0.20351 | 0 | 0.991062 |
| morex | LOD | 2.62532 | 4.76965 | 0.00000690231 |
| morex | PAL | 1.96767 | 2.23139 | 0.326184 |
| morex | SEN | 0 | 1.0734 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g04700.1 | +1 | 4e-65 | 221 | 154/375 (41%) | protein|OsFBX361 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +1 | 8e-90 | 286 | 173/382 (45%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2082 bp)
>BART1_0-u41655.023 2082 150831_barley_pseudomolecules CACTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGGCGCCGCCGGCGACCTCC CCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGCAGTGGAGAGAGAGGAGGGCTG ATGGGTCCTGCTGAGGTTCCCCAAATCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGC GTGTACGGCAGGAAGCTGTGGCGCTCCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTT GCCGAGATCCTCGTCCGTCTCTCTTCGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTG TGCAAGCGCTGGCGCAACATCCTCTCCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCAC CACCGGAAGCCTCCTCTGCTCGGCTTCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTC ATGGACTCGCCCGACCGTATCACTGCTGCCTGCTTCTCCATGCCCAAGAGAAACACACCC TACAACGACCATAGAGAATACATGGGCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAG CAAGAGCGCAAGACCTTCGTGTGGGACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTT CCACCCGGGCTCGATGACGCCTTTACAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTG TGTGCTGATGCTGAAGATGGGCATGTGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTG GTCTTGGTCTGCTGCGGTGGATACAATACACAGGCATTTTGCTCTGTCTATGACTCGGTA TCTGGTGTTTGGGGAGGTGTTTTCTCGACCGCGATATCAAGTATAATTTCTATGTTAAGG CCCAGCATCCTAGTTGGTAATACAATTTGCTGGTTGATTTCTGGAGGTGATATCCTTGTG TTTGACTTCGAATGTCAGAGCCTTCATGTGATCGAGAAGCCGGCATACTACTATGTTACC GACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTTGGCCTTGCTGTTTTGTTG GGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGATGGCGTCGTCGGGTGGGTG TTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAAATGGATTCTGTACGTTTC GTCGGGTATGATGAGGACACAAATGTGATTGTTCTCACTTCAATGACTGGCAACTTCACA CTCCAGCTTGACTCGATGCAGATCAAACATATTGTTAAAAGAAACAACATATGTTACGAC CCGTTTTATCCCTACACCAATTTCTATACTACAGCTAGGCAAGGCAACTTGGCGGGAAGG GATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGCTACCTTGGTCGAAT AATTTAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCATGGCTAGTTGGCGCA GGGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTGCAGTGAAGTTCTTC TTCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGTAGCCTGTTGGATCC TCTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGTCTCCTCTATGTTGT AGGGTCGTGGTCCGTGAATTGAATTTATCGGGTTTAATCATCCGAACTCTTATATATTTG TGTGCCTAGTGACTTGTCGAGTTGGTTCGGTTAATGCTTTGCTCTGTGATGCGAGGTACT AGCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACTTTACAGAGTTTCTTTGTGAAG TCCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATAGTGCTGGTCACATCACCACTT GCAGCAGAGGCAGACAATGCTTTTGGATTTCCGGATTGCAATGCTGGCTCTTTCTTGGAG GAGACAAGTTAAAAAATGTTGTCGGTTTTGGTTTCAACTTCAAAGAGTGTTGTGACTTGG CTCTTAATCAGAAGAGTTGTGAGATTTTATTTGAACTTTGTTTGACTGGATAGAATTACT GATTTTTCCTTAATTGCTTGTCCTATTCTGGGTCTGTCATAG
Protein Sequence (466 aa)
>BART1_0-u41655.023 466 150831_barley_pseudomolecules HSSQELADGQKGGAAPPATSPHPAAPSPSVRSSSGERGGLMGPAEVPQIQWAGPIPSSPR VYGRKLWRSVSKVLGNDNLLAEILVRLSSKPSSLPRASAVCKRWRNILSDPEFLKRFRKH HRKPPLLGFFEGYANRFTPVMDSPDRITAACFSMPKRNTPYNDHREYMGCRHGLAVLVNK QERKTFVWDPLTGRQHSVAFPPGLDDAFTGNFCMWRGAVLCADAEDGHVHGDCFSSPFKL VLVCCGGYNTQAFCSVYDSVSGVWGGVFSTAISSIISMLRPSILVGNTICWLISGGDILV FDFECQSLHVIEKPAYYYVTDGCFQLLRMEGGGLGLAVLLGLTIQLWERKSNCDGVVGWV LLQKTIPLEGMFPKMDSVRFVGYDEDTNVIVLTSMTGNFTLQLDSMQIKHIVKRNNICYD PFYPYTNFYTTARQGNLAGRDGSGTNCDRTRSANVLPWSNNLGIES