- Transcript BART1_0-u41655.009
- Transcript IDBART1_0-u41655.009
- Gene IDBART1_0-u41655
Exon Structure of BART1_0-u41655.009
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 707435 | 707321 | + |
chr6H | 2 | 707868 | 707609 | + |
chr6H | 3 | 708353 | 708300 | + |
chr6H | 4 | 709652 | 708511 | + |
chr6H | 5 | 710469 | 710381 | + |
chr6H | 6 | 711410 | 710916 | + |
chr6H | 7 | 712099 | 711540 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 0 |
morex | ETI | 0 | 0 | 0 |
morex | LEA | 0 | 0 | 0 |
morex | EPI | 0 | 0 | 0 |
morex | ROO | 0 | 0.089886 | 0 |
morex | ROO2 | 0.409222 | 0 | 0 |
morex | NOD | 0 | 0 | 0 |
morex | RAC | 0 | 0 | 0 |
morex | INF1 | 0.134792 | 0.265337 | 0 |
morex | INF2 | 0.324835 | 0 | 0.941777 |
morex | CAR5 | 0.23389 | 0.281878 | 0.26505 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0 | 0 | 0 |
morex | LOD | 0 | 0 | 0 |
morex | PAL | 0 | 0 | 0 |
morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os10g04700.1 | +2 | 6e-63 | 219 | 156/390 (40%) | protein|OsFBX361 - F-box domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi3g00580.1.p | +2 | 8e-88 | 286 | 173/382 (45%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2715 bp)
>BART1_0-u41655.009 2715 150831_barley_pseudomolecules CCTCAGTCCCCACTCTACACTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGG CGCCGCCGGCGACCTCCCCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGCGGCG CAGAGAGAGGGAGAGGAGCGGGTGGCGCCGACGGATCCCGCCGAGGCTCCCCAAGGCGGC CCATGGTAAGATCCCGCTTACGTTCGTTACTAATCCCCCTCTTCGTTTTGCTGGGATGGT TGAGGCTGAGATGGTGCCTCGTCAGTGGCTGCCGGAGTTGGCTCGATTAATGCTTGCATC TCTGTGTTATGAGGTGGATGGATGGACAAGAAGCAGTAGGCTCTGGCACTTTACACGGTT TCTTTGTCAAGTCTTCAGTGGAGAGAGAGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCA AATCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCG CTCCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTTGCCGAGATCCTCGTCCGTCTCTC TTCGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAACATCCT CTCCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCACCACCGGAAGCCTCCTCTGCTCGG CTTCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTCATGGACTCGCCCGACCGTATCAC TGCTGCCTGCTTCTCCATGCCCAAGAGAAACACACCCTACAACGACCATAGAGAATACAT GGGCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAGCAAGAGCGCAAGACCTTCGTGTG GGACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTTCCACCCGGGCTCGATGACGCCTT TACAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTGTGTGCTGATGCTGAAGATGGGCA TGTGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTGGTCTTGGTCTGCTGCGGTGGATA CAATACACAGGCATTTTGCTCTGTCTATGACTCGGTATCTGGTGTTTGGGGAGGTGTTTT CTCGACCGCGATATCAAGTATAATTTCTATGTTAAGGCCCAGCATCCTAGTTGGTAATAC AATTTGCTGGTTGATTTCTGGAGGTGATATCCTTGTGTTTGACTTCGAATGTCAGAGCCT TCATGTGATCGAGAAGCCGGCATACTACTATGTTACCGACGGGTGTTTTCAGCTCTTACG GATGGAGGGTGGTGGACTTGGCCTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTGGGA GAGGAAATCTAACTGTGATGGCGTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCCGCT GGAGGGGATGTTTCCAAAAATGGATTCTGTACGTTTCGTCGGGTATGATGAGGACACAAA TGTGATTGTTCTCACTTCAATGACTGGCAACTTCACACTCCAGCTTGACTCGATGCAGAT CAAACATATTGTTAAAAGAAACAACATATGTTACGACCCGTTTTATCCCTACACCAATTT CTATACTACAGGCAAGGCAACTTGGCGGGAAGGGATGGATCTGGAACTAATTGTGATCGG ACCAGATCTGCTAACGTGCTACCTTGGTCGAATAATTTAGGTATTGAGAGTTAAATTCGG GTTGCTGAGACGCAGCCATGGCTAGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATG CAGACATGGCTAGTTGGTGCAGTGAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGC TTAAAATGTCCTGCTATGTAGCCTGTTGGATCCTCTACTATGTATGCTGTGGCAGATGCG GTGGTCGATGCTGAGACGTCTCCTCTATGTTGTAGGGTCGTGGTCCGTGAATTGAATTTA TCGGGTTTAATCATCCGAACTCTTATATATTTGTGTGCCTAGTGACTTGTCGAGTTGGTT CGGTTAATGCTTTGCTCTGTGATGCGAGGTACTAGCAAGGTGGATGGACAAGAAGCAGTG GGCTCTGGCACTTTACAGAGTTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGAT CTAACTGTGATAGTGCTGGTCACATCACCACTTGCAGCAGAGGCAGACAATGCTTCTTCA GTTGGATTTCCGGATTGCAATGCTGGCTCTTTCTTGGAGGAGACAAGTTAAAAAATGTTG TCGGTTTTGGTTTCAACTTCAAAGAGTGTTGTGACTTGGCTCTTAATCAGAAGAGTTGTG AGATTTTATTTGAACTTTGTTTGACTGGATAGAATTACTGATTTTTCCTTAATTGCTTGT CCTATTCTGGGTCTGTCATAGAGAATTTTCTTGTCCTGAGTTACATTGAAGATATTTTCC AGATCTTGGACTTGCCATTCCCGATACTTGTCCAATAAGTCAGCCCTCCAGGAAAAACAC AGACTACATTGGCCTGGCGAGAGAGCCAACCGGTGATTGCCACAGACCACATTGGTCTGG CGAGTTAGCCAACCGGTGATTGCCACGACGTTTGTTTTTCTTGGGACCGCACCTTGGTTT CTTGGGACCGCACCTTGGCTCCTGGGGCTACATGTGCATAGGGAAAATGCTGTCTTGGTG GTTGTTGCTGTCAAAACCGAAATGTTTGGCCATGATATTCAGTATTTTTAACATAGTTTC AGTTATCTTTGACAC
Protein Sequence (552 aa)
>BART1_0-u41655.009 552 150831_barley_pseudomolecules LSPHSTLLSGARGWTERRSGAAGDLPSPRRPVPVGPVERRRERERSGWRRRIPPRLPKAA HGKIPLTFVTNPPLRFAGMVEAEMVPRQWLPELARLMLASLCYEVDGWTRSSRLWHFTRF LCQVFSGERGGLMGPAEVPQIQWAGPIPSSPRVYGRKLWRSVSKVLGNDNLLAEILVRLS SKPSSLPRASAVCKRWRNILSDPEFLKRFRKHHRKPPLLGFFEGYANRFTPVMDSPDRIT AACFSMPKRNTPYNDHREYMGCRHGLAVLVNKQERKTFVWDPLTGRQHSVAFPPGLDDAF TGNFCMWRGAVLCADAEDGHVHGDCFSSPFKLVLVCCGGYNTQAFCSVYDSVSGVWGGVF STAISSIISMLRPSILVGNTICWLISGGDILVFDFECQSLHVIEKPAYYYVTDGCFQLLR MEGGGLGLAVLLGLTIQLWERKSNCDGVVGWVLLQKTIPLEGMFPKMDSVRFVGYDEDTN VIVLTSMTGNFTLQLDSMQIKHIVKRNNICYDPFYPYTNFYTTGKATWREGMDLELIVIG PDLLTCYLGRII