Exon Structure of BART1_0-u41655.009

ChromosomeExonStartStopDirection
chr6H1707435707321+
chr6H2707868707609+
chr6H3708353708300+
chr6H4709652708511+
chr6H5710469710381+
chr6H6711410710916+
chr6H7712099711540+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB000
morexETI000
morexLEA000
morexEPI000
morexROO00.0898860
morexROO20.40922200
morexNOD000
morexRAC000
morexINF10.1347920.2653370
morexINF20.32483500.941777
morexCAR50.233890.2818780.26505
morexCAR15000
morexLEM000
morexLOD000
morexPAL000
morexSEN000



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g04700.1 +2 6e-63 219 156/390 (40%) protein|OsFBX361 - F-box domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi3g00580.1.p +2 8e-88 286 173/382 (45%) pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2715 bp)

>BART1_0-u41655.009 2715 150831_barley_pseudomolecules
CCTCAGTCCCCACTCTACACTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGG
CGCCGCCGGCGACCTCCCCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGCGGCG
CAGAGAGAGGGAGAGGAGCGGGTGGCGCCGACGGATCCCGCCGAGGCTCCCCAAGGCGGC
CCATGGTAAGATCCCGCTTACGTTCGTTACTAATCCCCCTCTTCGTTTTGCTGGGATGGT
TGAGGCTGAGATGGTGCCTCGTCAGTGGCTGCCGGAGTTGGCTCGATTAATGCTTGCATC
TCTGTGTTATGAGGTGGATGGATGGACAAGAAGCAGTAGGCTCTGGCACTTTACACGGTT
TCTTTGTCAAGTCTTCAGTGGAGAGAGAGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCA
AATCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCG
CTCCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTTGCCGAGATCCTCGTCCGTCTCTC
TTCGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAACATCCT
CTCCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCACCACCGGAAGCCTCCTCTGCTCGG
CTTCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTCATGGACTCGCCCGACCGTATCAC
TGCTGCCTGCTTCTCCATGCCCAAGAGAAACACACCCTACAACGACCATAGAGAATACAT
GGGCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAGCAAGAGCGCAAGACCTTCGTGTG
GGACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTTCCACCCGGGCTCGATGACGCCTT
TACAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTGTGTGCTGATGCTGAAGATGGGCA
TGTGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTGGTCTTGGTCTGCTGCGGTGGATA
CAATACACAGGCATTTTGCTCTGTCTATGACTCGGTATCTGGTGTTTGGGGAGGTGTTTT
CTCGACCGCGATATCAAGTATAATTTCTATGTTAAGGCCCAGCATCCTAGTTGGTAATAC
AATTTGCTGGTTGATTTCTGGAGGTGATATCCTTGTGTTTGACTTCGAATGTCAGAGCCT
TCATGTGATCGAGAAGCCGGCATACTACTATGTTACCGACGGGTGTTTTCAGCTCTTACG
GATGGAGGGTGGTGGACTTGGCCTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTGGGA
GAGGAAATCTAACTGTGATGGCGTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCCGCT
GGAGGGGATGTTTCCAAAAATGGATTCTGTACGTTTCGTCGGGTATGATGAGGACACAAA
TGTGATTGTTCTCACTTCAATGACTGGCAACTTCACACTCCAGCTTGACTCGATGCAGAT
CAAACATATTGTTAAAAGAAACAACATATGTTACGACCCGTTTTATCCCTACACCAATTT
CTATACTACAGGCAAGGCAACTTGGCGGGAAGGGATGGATCTGGAACTAATTGTGATCGG
ACCAGATCTGCTAACGTGCTACCTTGGTCGAATAATTTAGGTATTGAGAGTTAAATTCGG
GTTGCTGAGACGCAGCCATGGCTAGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATG
CAGACATGGCTAGTTGGTGCAGTGAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGC
TTAAAATGTCCTGCTATGTAGCCTGTTGGATCCTCTACTATGTATGCTGTGGCAGATGCG
GTGGTCGATGCTGAGACGTCTCCTCTATGTTGTAGGGTCGTGGTCCGTGAATTGAATTTA
TCGGGTTTAATCATCCGAACTCTTATATATTTGTGTGCCTAGTGACTTGTCGAGTTGGTT
CGGTTAATGCTTTGCTCTGTGATGCGAGGTACTAGCAAGGTGGATGGACAAGAAGCAGTG
GGCTCTGGCACTTTACAGAGTTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGAT
CTAACTGTGATAGTGCTGGTCACATCACCACTTGCAGCAGAGGCAGACAATGCTTCTTCA
GTTGGATTTCCGGATTGCAATGCTGGCTCTTTCTTGGAGGAGACAAGTTAAAAAATGTTG
TCGGTTTTGGTTTCAACTTCAAAGAGTGTTGTGACTTGGCTCTTAATCAGAAGAGTTGTG
AGATTTTATTTGAACTTTGTTTGACTGGATAGAATTACTGATTTTTCCTTAATTGCTTGT
CCTATTCTGGGTCTGTCATAGAGAATTTTCTTGTCCTGAGTTACATTGAAGATATTTTCC
AGATCTTGGACTTGCCATTCCCGATACTTGTCCAATAAGTCAGCCCTCCAGGAAAAACAC
AGACTACATTGGCCTGGCGAGAGAGCCAACCGGTGATTGCCACAGACCACATTGGTCTGG
CGAGTTAGCCAACCGGTGATTGCCACGACGTTTGTTTTTCTTGGGACCGCACCTTGGTTT
CTTGGGACCGCACCTTGGCTCCTGGGGCTACATGTGCATAGGGAAAATGCTGTCTTGGTG
GTTGTTGCTGTCAAAACCGAAATGTTTGGCCATGATATTCAGTATTTTTAACATAGTTTC
AGTTATCTTTGACAC



Protein Sequence (552 aa)

>BART1_0-u41655.009 552 150831_barley_pseudomolecules
LSPHSTLLSGARGWTERRSGAAGDLPSPRRPVPVGPVERRRERERSGWRRRIPPRLPKAA
HGKIPLTFVTNPPLRFAGMVEAEMVPRQWLPELARLMLASLCYEVDGWTRSSRLWHFTRF
LCQVFSGERGGLMGPAEVPQIQWAGPIPSSPRVYGRKLWRSVSKVLGNDNLLAEILVRLS
SKPSSLPRASAVCKRWRNILSDPEFLKRFRKHHRKPPLLGFFEGYANRFTPVMDSPDRIT
AACFSMPKRNTPYNDHREYMGCRHGLAVLVNKQERKTFVWDPLTGRQHSVAFPPGLDDAF
TGNFCMWRGAVLCADAEDGHVHGDCFSSPFKLVLVCCGGYNTQAFCSVYDSVSGVWGGVF
STAISSIISMLRPSILVGNTICWLISGGDILVFDFECQSLHVIEKPAYYYVTDGCFQLLR
MEGGGLGLAVLLGLTIQLWERKSNCDGVVGWVLLQKTIPLEGMFPKMDSVRFVGYDEDTN
VIVLTSMTGNFTLQLDSMQIKHIVKRNNICYDPFYPYTNFYTTGKATWREGMDLELIVIG
PDLLTCYLGRII