- Transcript BART1_0-u41655.034
- Transcript IDBART1_0-u41655.034
- Gene IDBART1_0-u41655
Barley RTD
Exon Structure of BART1_0-u41655.034
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 709652 | 708649 | + |
| chr6H | 2 | 710469 | 710377 | + |
| chr6H | 3 | 711157 | 710916 | + |
| chr6H | 4 | 711410 | 711271 | + |
| chr6H | 5 | 711572 | 711540 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 15.1916 | 12.2628 | 16.7384 |
| morex | ETI | 6.35193 | 7.7553 | 10.2609 |
| morex | LEA | 8.12341 | 4.27602 | 2.13065 |
| morex | EPI | 0.647424 | 0.0893927 | 2.27234 |
| morex | ROO | 10.5866 | 7.31995 | 4.7057 |
| morex | ROO2 | 6.23665 | 8.21908 | 6.53007 |
| morex | NOD | 7.25453 | 8.48145 | 10.3985 |
| morex | RAC | 13.2604 | 15.8438 | 14.5254 |
| morex | INF1 | 41.4993 | 48.3669 | 50.8359 |
| morex | INF2 | 61.2558 | 48.1248 | 48.8199 |
| morex | CAR5 | 12.186 | 13.8849 | 20.9325 |
| morex | CAR15 | 0 | 0.92902 | 0.00000478543 |
| morex | LEM | 8.11548 | 4.65638 | 4.79728 |
| morex | LOD | 14.4168 | 14.0381 | 13.7617 |
| morex | PAL | 5.82426 | 4.289 | 4.88609 |
| morex | SEN | 3.78666 | 4.65884 | 3.12372 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g04700.1 | +2 | 4e-55 | 191 | 138/353 (39%) | protein|OsFBX361 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +2 | 4e-81 | 258 | 158/358 (44%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1512 bp)
>BART1_0-u41655.034 1512 150831_barley_pseudomolecules GTCCGCCGTGTGCAAGCGCTGGCGCAACATCCTCTCCGACCCCGAGTTCCTCAAACGCTT CCGCAAGCACCACCGGAAGCCTCCTCTGCTCGGCTTCTTTGAAGGTTATGCTAACCGCTT CACCCCTGTCATGGACTCGCCCGACCGTATCACTGCTGCCTGCTTCTCCATGCCCAAGAG AAACACACCCTACAACGACCATAGAGAATACATGGGCTGCCGCCATGGCCTTGCTGTCCT GGTCAACAAGCAAGAGCGCAAGACCTTCGTGTGGGACCCTCTCACTGGCCGACAGCACAG CGTGGCTTTTCCACCCGGGCTCGATGACGCCTTTACAGGGAATTTCTGTATGTGGCGCGG CGCGGTGTTGTGTGCTGATGCTGAAGATGGGCATGTGCACGGAGATTGCTTCTCGAGTCC GTTTAAATTGGTCTTGGTCTGCTGCGGTGGATACAATACACAGGCATTTTGCTCTGTCTA TGACTCGGTATCTGGTGTTTGGGGAGGTGTTTTCTCGACCGCGATATCAAGTATAATTTC TATGTTAAGGCCCAGCATCCTAGTTGGTAATACAATTTGCTGGTTGATTTCTGGAGGTGA TATCCTTGTGTTTGACTTCGAATGTCAGAGCCTTCATGTGATCGAGAAGCCGGCATACTA CTATGTTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTTGGCCTTGC TGTTTTGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGATGGCGTCGT CGGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAAATGGATTC TGTACGTTTCGTCGGGTATGATGAGGACACAAATGTGATTGTTCTCACTTCAATGACTGG CAACTTCACACTCCAGCTTGACTCGATGCAGATCAAACATATTGTTAAAAGAAACAACAT ATGTTACGACCCGTTTTATCCCTACACCAATTTCTATACTACAGCTAGGCAAGGCAACTT GGCGGGAAGGGATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGCTACC TTGGTCGAATAATTTAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCATGGCT AGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTGCAGT GAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGTAGCC TGTTGGATCCTCTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGTCTCC TCTATGTTGTAGGGTCGTGCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACTTTAC AGAGTTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATAGTGC TGGTCACATCACCACTTGCAGCAGAGGCAGACAATGCTTCTTCAGTTGGATTTCCGGATT GCAATGCTGGCT
Protein Sequence (326 aa)
>BART1_0-u41655.034 326 150831_barley_pseudomolecules MDSPDRITAACFSMPKRNTPYNDHREYMGCRHGLAVLVNKQERKTFVWDPLTGRQHSVAF PPGLDDAFTGNFCMWRGAVLCADAEDGHVHGDCFSSPFKLVLVCCGGYNTQAFCSVYDSV SGVWGGVFSTAISSIISMLRPSILVGNTICWLISGGDILVFDFECQSLHVIEKPAYYYVT DGCFQLLRMEGGGLGLAVLLGLTIQLWERKSNCDGVVGWVLLQKTIPLEGMFPKMDSVRF VGYDEDTNVIVLTSMTGNFTLQLDSMQIKHIVKRNNICYDPFYPYTNFYTTARQGNLAGR DGSGTNCDRTRSANVLPWSNNLGIES