- Transcript BART1_0-u41655.024
- Transcript IDBART1_0-u41655.024
- Gene IDBART1_0-u41655
Barley RTD
Exon Structure of BART1_0-u41655.024
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707435 | 707340 | + |
| chr6H | 2 | 708353 | 708303 | + |
| chr6H | 3 | 709652 | 708511 | + |
| chr6H | 4 | 710469 | 710381 | + |
| chr6H | 5 | 711762 | 710916 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 7.32795 | 4.73994 | 4.32527 |
| morex | ETI | 6.29832 | 9.42699 | 9.49079 |
| morex | LEA | 1.43327 | 1.35635 | 0.183349 |
| morex | EPI | 2.2336 | 3.92299 | 2.49035 |
| morex | ROO | 5.06917 | 3.48857 | 1.1584 |
| morex | ROO2 | 9.30609 | 8.5047 | 6.42445 |
| morex | NOD | 1.62303 | 8.53747 | 8.51888 |
| morex | RAC | 13.9968 | 13.7838 | 14.7357 |
| morex | INF1 | 2.79712 | 5.0655 | 2.57484 |
| morex | INF2 | 2.02443 | 8.84679 | 5.08801 |
| morex | CAR5 | 4.55054 | 7.31542 | 2.972 |
| morex | CAR15 | 1.23716 | 4.05264 | 2.15998 |
| morex | LEM | 6.99692 | 5.32857 | 5.43755 |
| morex | LOD | 14.6037 | 14.1425 | 18.2795 |
| morex | PAL | 3.97725 | 4.82813 | 5.30407 |
| morex | SEN | 3.92712 | 3.16583 | 6.39396 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g04700.1 | +2 | 5e-64 | 219 | 153/372 (41%) | protein|OsFBX361 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +2 | 2e-89 | 287 | 173/382 (45%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2225 bp)
>BART1_0-u41655.024 2225 150831_barley_pseudomolecules CTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGGCGCCGCCGGCGACCTCCCC TCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGTGGAGAGAGAGGAGGGCTGATGGG TCCTGCTGAGGTTCCCCAAATCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGCGTGTA CGGCAGGAAGCTGTGGCGCTCCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTTGCCGA GATCCTCGTCCGTCTCTCTTCGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAA GCGCTGGCGCAACATCCTCTCCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCACCACCG GAAGCCTCCTCTGCTCGGCTTCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTCATGGA CTCGCCCGACCGTATCACTGCTGCCTGCTTCTCCATGCCCAAGAGAAACACACCCTACAA CGACCATAGAGAATACATGGGCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAGCAAGA GCGCAAGACCTTCGTGTGGGACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTTCCACC CGGGCTCGATGACGCCTTTACAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTGTGTGC TGATGCTGAAGATGGGCATGTGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTGGTCTT GGTCTGCTGCGGTGGATACAATACACAGGCATTTTGCTCTGTCTATGACTCGGTATCTGG TGTTTGGGGAGGTGTTTTCTCGACCGCGATATCAAGTATAATTTCTATGTTAAGGCCCAG CATCCTAGTTGGTAATACAATTTGCTGGTTGATTTCTGGAGGTGATATCCTTGTGTTTGA CTTCGAATGTCAGAGCCTTCATGTGATCGAGAAGCCGGCATACTACTATGTTACCGACGG GTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTTGGCCTTGCTGTTTTGTTGGGCCT GACCATCCAATTGTGGGAGAGGAAATCTAACTGTGATGGCGTCGTCGGGTGGGTGTTGCT GCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAAATGGATTCTGTACGTTTCGTCGG GTATGATGAGGACACAAATGTGATTGTTCTCACTTCAATGACTGGCAACTTCACACTCCA GCTTGACTCGATGCAGATCAAACATATTGTTAAAAGAAACAACATATGTTACGACCCGTT TTATCCCTACACCAATTTCTATACTACAGGCAAGGCAACTTGGCGGGAAGGGATGGATCT GGAACTAATTGTGATCGGACCAGATCTGCTAACGTGCTACCTTGGTCGAATAATTTAGGT ATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCATGGCTAGTTGGCGCAGGGAAGTTC TTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTGCAGTGAAGTTCTTCTTCTATTTT GTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGTAGCCTGTTGGATCCTCTACTATG TATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGTCTCCTCTATGTTGTAGGGTCGTG GTCCGTGAATTGAATTTATCGGGTTTAATCATCCGAACTCTTATATATTTGTGTGCCTAG TGACTTGTCGAGTTGGTTCGGTTAATGCTTTGCTCTGTGATGCGAGGTACTAGCAAGGTG GATGGACAAGAAGCAGTGGGCTCTGGCACTTTACAGAGTTTCTTTGTGAAGTCCCTAACC GCGAGTCTTGCTAGTGATCTAACTGTGATAGTGCTGGTCACATCACCACTTGCAGCAGAG GCAGACAATGCTTGTATGTGCCCGGTTTTACTGCCCAGTTTAGCTTTAGTAATTTCAAAA GTATCCCCTTCTTGAAGCATATACACTTTCATATTCCGGTGTCTGGATATTTGCTGCTGA TAACTTGTCATGTTTATTTTAGCTTCAGTTGGATTTCCGGATTGCAATGCTGGCTCTTTC TTGGAGGAGACAAGTTAAAAAATGTTGTCGGTTTTGGTTTCAACTTCAAAGAGTGTTGTG ACTTGGCTCTTAATCAGAAGAGTTGTGAGATTTTATTTGAACTTTGTTTGACTGGATAGA ATTACTGATTTTTCCTTAATTGCTTGTCCTATTCTGGGTCTGTCATAGAGAATTTTCTTG TCCTG
Protein Sequence (458 aa)
>BART1_0-u41655.024 458 150831_barley_pseudomolecules SSQELADGQKGGAAPPATSPHPAAPSPSVRSSGERGGLMGPAEVPQIQWAGPIPSSPRVY GRKLWRSVSKVLGNDNLLAEILVRLSSKPSSLPRASAVCKRWRNILSDPEFLKRFRKHHR KPPLLGFFEGYANRFTPVMDSPDRITAACFSMPKRNTPYNDHREYMGCRHGLAVLVNKQE RKTFVWDPLTGRQHSVAFPPGLDDAFTGNFCMWRGAVLCADAEDGHVHGDCFSSPFKLVL VCCGGYNTQAFCSVYDSVSGVWGGVFSTAISSIISMLRPSILVGNTICWLISGGDILVFD FECQSLHVIEKPAYYYVTDGCFQLLRMEGGGLGLAVLLGLTIQLWERKSNCDGVVGWVLL QKTIPLEGMFPKMDSVRFVGYDEDTNVIVLTSMTGNFTLQLDSMQIKHIVKRNNICYDPF YPYTNFYTTGKATWREGMDLELIVIGPDLLTCYLGRII