- Transcript BART1_0-u41655.017
- Transcript IDBART1_0-u41655.017
- Gene IDBART1_0-u41655
Barley RTD
Exon Structure of BART1_0-u41655.017
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707435 | 707330 | + |
| chr6H | 2 | 707678 | 707609 | + |
| chr6H | 3 | 708353 | 708300 | + |
| chr6H | 4 | 709178 | 708511 | + |
| chr6H | 5 | 709652 | 709277 | + |
| chr6H | 6 | 710469 | 710377 | + |
| chr6H | 7 | 712187 | 710916 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0.0000196092 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0.223449 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0.0000000807003 | 0 | 0 |
| morex | CAR15 | 0.257537 | 0 | 0.0040731 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.0000640692 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g10980.1 | +1 | 5e-44 | 159 | 91/206 (44%) | protein|OsFBX379 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +1 | 5e-59 | 169 | 102/216 (47%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2639 bp)
>BART1_0-u41655.017 2639 150831_barley_pseudomolecules CCACTCTACACTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGGCGCCGCCGG CGACCTCCCCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGCGGCGCAGAGAGAG GGAGAGGAGCGGGTGGCGCCGACGGATCCCGCCGAGGCTCCCCAAGGCGGCCCATGCAGT GGAGAGAGAGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCAAATCCAATGGGCCGGCCCC ATTCCCAGCTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCGCTCCGTGTCCAAGGTGCTC GGCAACGACAATCTCCTTGCCGAGATCCTCGTCCGTCTCTCTTCGAAGCCGTCCTCGCTC CCCCGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAACATCCTCTCCGACCCCGAGTTCCTC AAACGCTTCCGCAAGCACCACCGGAAGCCTCCTCTGCTCGGCTTCTTTGAAGGTTATGCT AACCGCTTCACCCCTGTCATGGACTCGCCCGACCGTATCACTGCTGCCTGCTTCTCCATG CCCAAGAGAAACACACCCTACAACGACCATAGAGAATACATGGGCTGCCGCCATGGCCTT GCTGTCCTGGTCAACAAGCAAGAGCGCAAGACCTTCGTGTGGGACCCTCTCACTGGCCGA CAGCACAGCGTGGCTTTTCCACCCGGGCTCGATGACGCCTTTACAGGGAATTTCTGTATG TGGCGCGGCGCGGTGTTGTGTGCTGATGCTGAAGATGGGCATGTGCACGGAGATTGCTTC TCGAGTCCGTTTAAATTGGTCTTGGTCTGCTGCGGTGGATACAATACACAGGCATTTTGC TCTGTCTATGACTCGGTATCTGGTGTTTGGGGAGGTGTTTTCTCGACCGCGATATCAAAG CCTTCATGTGATCGAGAAGCCGGCATACTACTATGTTACCGACGGGTGTTTTCAGCTCTT ACGGATGGAGGGTGGTGGACTTGGCCTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTG GGAGAGGAAATCTAACTGTGATGGCGTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCC GCTGGAGGGGATGTTTCCAAAAATGGATTCTGTACGTTTCGTCGGGTATGATGAGGACAC AAATGTGATTGTTCTCACTTCAATGACTGGCAACTTCACACTCCAGCTTGACTCGATGCA GATCAAACATATTGTTAAAAGAAACAACATATGTTACGACCCGTTTTATCCCTACACCAA TTTCTATACTACAGCTAGGCAAGGCAACTTGGCGGGAAGGGATGGATCTGGAACTAATTG TGATCGGACCAGATCTGCTAACGTGCTACCTTGGTCGAATAATTTAGGTATTGAGAGTTA AATTCGGGTTGCTGAGACGCAGCCATGGCTAGTTGGCGCAGGGAAGTTCTTCTATTCTGC TGAGATGCAGACATGGCTAGTTGGTGCAGTGAAGTTCTTCTTCTATTTTGTATGGTGTGG TCGACGCTTAAAATGTCCTGCTATGTAGCCTGTTGGATCCTCTACTATGTATGCTGTGGC AGATGCGGTGGTCGATGCTGAGACGTCTCCTCTATGTTGTAGGGTCGTGGTCCGTGAATT GAATTTATCGGGTTTAATCATCCGAACTCTTATATATTTGTGTGCCTAGTGACTTGTCGA GTTGGTTCGGTTAATGCTTTGCTCTGTGATGCGAGGTACTAGCAAGGTGGATGGACAAGA AGCAGTGGGCTCTGGCACTTTACAGAGTTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGC TAGTGATCTAACTGTGATAGTGCTGGTCACATCACCACTTGCAGCAGAGGCAGACAATGC TTGTATGTGCCCGGTTTTACTGCCCAGTTTAGCTTTAGTAATTTCAAAAGTATCCCCTTC TTGAAGCATATACACTTTCATATTCCGGTGTCTGGATATTTGCTGCTGATAACTTGTCAT GTTTATTTTAGCTTCAGTTGGATTTCCGGATTGCAATGCTGGCTCTTTCTTGGAGGAGAC AAGTTAAAAAATGTTGTCGGTTTTGGTTTCAACTTCAAAGAGTGTTGTGACTTGGCTCTT AATCAGAAGAGTTGTGAGATTTTATTTGAACTTTGTTTGACTGGATAGAATTACTGATTT TTCCTTAATTGCTTGTCCTATTCTGGGTCTGTCATAGAGAATTTTCTTGTCCTGAGTTAC ATTGAAGATATTTTCCAGATCTTGGACTTGCCATTCCCGATACTTGTCCAATAAGTCAGC CCTCCAGGAAAAACACAGACTACATTGGCCTGGCGAGAGAGCCAACCGGTGATTGCCACA GACCACATTGGTCTGGCGAGTTAGCCAACCGGTGATTGCCACGACGTTTGTTTTTCTTGG GACCGCACCTTGGTTTCTTGGGACCGCACCTTGGCTCCTGGGGCTACATGTGCATAGGGA AAATGCTGTCTTGGTGGTTGTTGCTGTCAAAACCGAAATGTTTGGCCATGATATTCAGTA TTTTTAACATAGTTTCAGTTATCTTTGACACAGTTTCAGTTCTATACGTTTCCATGCTGC ATTTGCTTCCAGTAGACATACATCACATTCACAATGTTGTGTCCTCCACTTGACCTGAC
Protein Sequence (344 aa)
>BART1_0-u41655.017 344 150831_barley_pseudomolecules PLYTPLRSSRMDRKEERRRRRPPLTPPPRPRRSGRAAQREGEERVAPTDPAEAPQGGPCS GERGGLMGPAEVPQIQWAGPIPSSPRVYGRKLWRSVSKVLGNDNLLAEILVRLSSKPSSL PRASAVCKRWRNILSDPEFLKRFRKHHRKPPLLGFFEGYANRFTPVMDSPDRITAACFSM PKRNTPYNDHREYMGCRHGLAVLVNKQERKTFVWDPLTGRQHSVAFPPGLDDAFTGNFCM WRGAVLCADAEDGHVHGDCFSSPFKLVLVCCGGYNTQAFCSVYDSVSGVWGGVFSTAISK PSCDREAGILLCYRRVFSALTDGGWWTWPCCFVGPDHPIVGEEI