- Transcript BART1_0-u41655.029
- Transcript IDBART1_0-u41655.029
- Gene IDBART1_0-u41655
Barley RTD
Exon Structure of BART1_0-u41655.029
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707435 | 707388 | + |
| chr6H | 2 | 707678 | 707534 | + |
| chr6H | 3 | 708353 | 708300 | + |
| chr6H | 4 | 709652 | 708511 | + |
| chr6H | 5 | 710469 | 710381 | + |
| chr6H | 6 | 711410 | 710916 | + |
| chr6H | 7 | 712182 | 711540 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.469838 | 0.275325 | 0.351782 |
| morex | LEA | 0.696437 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0.462778 | 0.4466 | 0.152561 |
| morex | ROO2 | 0.435986 | 0.552331 | 0.273692 |
| morex | NOD | 0.0753194 | 0 | 0 |
| morex | RAC | 2.17822 | 0.805481 | 0.475268 |
| morex | INF1 | 0.0000000453199 | 0.976853 | 0.648271 |
| morex | INF2 | 0.806472 | 0.235015 | 1.8517 |
| morex | CAR5 | 1.95475 | 0.330116 | 0.126639 |
| morex | CAR15 | 0.424805 | 0.290984 | 0 |
| morex | LEM | 0 | 0.935365 | 0.380553 |
| morex | LOD | 0 | 0.492496 | 1.08175 |
| morex | PAL | 2.03897 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g04700.1 | +3 | 4e-63 | 219 | 152/372 (41%) | protein|OsFBX361 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +3 | 4e-88 | 286 | 173/382 (45%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2616 bp)
>BART1_0-u41655.029 2616 150831_barley_pseudomolecules GGCGACCTCCCCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGTAAAAGCAAACC CTAGCCAGATTTTCGTTCCCCCCCACCTCCCAATCAAACCCTAACATTCCTCCCCTGCCT CAGCGGCGCAGAGAGAGGGAGAGGAGCGGGTGGCGCCGACGGATCCCGCCGAGGCTCCCC AAGGCGGCCCATGCAGTGGAGAGAGAGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCAAA TCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCGCT CCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTTGCCGAGATCCTCGTCCGTCTCTCTT CGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAACATCCTCT CCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCACCACCGGAAGCCTCCTCTGCTCGGCT TCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTCATGGACTCGCCCGACCGTATCACTG CTGCCTGCTTCTCCATGCCCAAGAGAAACACACCCTACAACGACCATAGAGAATACATGG GCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAGCAAGAGCGCAAGACCTTCGTGTGGG ACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTTCCACCCGGGCTCGATGACGCCTTTA CAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTGTGTGCTGATGCTGAAGATGGGCATG TGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTGGTCTTGGTCTGCTGCGGTGGATACA ATACACAGGCATTTTGCTCTGTCTATGACTCGGTATCTGGTGTTTGGGGAGGTGTTTTCT CGACCGCGATATCAAGTATAATTTCTATGTTAAGGCCCAGCATCCTAGTTGGTAATACAA TTTGCTGGTTGATTTCTGGAGGTGATATCCTTGTGTTTGACTTCGAATGTCAGAGCCTTC ATGTGATCGAGAAGCCGGCATACTACTATGTTACCGACGGGTGTTTTCAGCTCTTACGGA TGGAGGGTGGTGGACTTGGCCTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTGGGAGA GGAAATCTAACTGTGATGGCGTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGG AGGGGATGTTTCCAAAAATGGATTCTGTACGTTTCGTCGGGTATGATGAGGACACAAATG TGATTGTTCTCACTTCAATGACTGGCAACTTCACACTCCAGCTTGACTCGATGCAGATCA AACATATTGTTAAAAGAAACAACATATGTTACGACCCGTTTTATCCCTACACCAATTTCT ATACTACAGGCAAGGCAACTTGGCGGGAAGGGATGGATCTGGAACTAATTGTGATCGGAC CAGATCTGCTAACGTGCTACCTTGGTCGAATAATTTAGGTATTGAGAGTTAAATTCGGGT TGCTGAGACGCAGCCATGGCTAGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCA GACATGGCTAGTTGGTGCAGTGAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGCTT AAAATGTCCTGCTATGTAGCCTGTTGGATCCTCTACTATGTATGCTGTGGCAGATGCGGT GGTCGATGCTGAGACGTCTCCTCTATGTTGTAGGGTCGTGGTCCGTGAATTGAATTTATC GGGTTTAATCATCCGAACTCTTATATATTTGTGTGCCTAGTGACTTGTCGAGTTGGTTCG GTTAATGCTTTGCTCTGTGATGCGAGGTACTAGCAAGGTGGATGGACAAGAAGCAGTGGG CTCTGGCACTTTACAGAGTTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCT AACTGTGATAGTGCTGGTCACATCACCACTTGCAGCAGAGGCAGACAATGCTTCTTCAGT TGGATTTCCGGATTGCAATGCTGGCTCTTTCTTGGAGGAGACAAGTTAAAAAATGTTGTC GGTTTTGGTTTCAACTTCAAAGAGTGTTGTGACTTGGCTCTTAATCAGAAGAGTTGTGAG ATTTTATTTGAACTTTGTTTGACTGGATAGAATTACTGATTTTTCCTTAATTGCTTGTCC TATTCTGGGTCTGTCATAGAGAATTTTCTTGTCCTGAGTTACATTGAAGATATTTTCCAG ATCTTGGACTTGCCATTCCCGATACTTGTCCAATAAGTCAGCCCTCCAGGAAAAACACAG ACTACATTGGCCTGGCGAGAGAGCCAACCGGTGATTGCCACAGACCACATTGGTCTGGCG AGTTAGCCAACCGGTGATTGCCACGACGTTTGTTTTTCTTGGGACCGCACCTTGGTTTCT TGGGACCGCACCTTGGCTCCTGGGGCTACATGTGCATAGGGAAAATGCTGTCTTGGTGGT TGTTGCTGTCAAAACCGAAATGTTTGGCCATGATATTCAGTATTTTTAACATAGTTTCAG TTATCTTTGACACAGTTTCAGTTCTATACGTTTCCATGCTGCATTTGCTTCCAGTAGACA TACATCACATTCACAATGTTGTGTCCTCCACTTGAC
Protein Sequence (420 aa)
>BART1_0-u41655.029 420 150831_barley_pseudomolecules MGPAEVPQIQWAGPIPSSPRVYGRKLWRSVSKVLGNDNLLAEILVRLSSKPSSLPRASAV CKRWRNILSDPEFLKRFRKHHRKPPLLGFFEGYANRFTPVMDSPDRITAACFSMPKRNTP YNDHREYMGCRHGLAVLVNKQERKTFVWDPLTGRQHSVAFPPGLDDAFTGNFCMWRGAVL CADAEDGHVHGDCFSSPFKLVLVCCGGYNTQAFCSVYDSVSGVWGGVFSTAISSIISMLR PSILVGNTICWLISGGDILVFDFECQSLHVIEKPAYYYVTDGCFQLLRMEGGGLGLAVLL GLTIQLWERKSNCDGVVGWVLLQKTIPLEGMFPKMDSVRFVGYDEDTNVIVLTSMTGNFT LQLDSMQIKHIVKRNNICYDPFYPYTNFYTTGKATWREGMDLELIVIGPDLLTCYLGRII