barSeed - Barley Seed Development Database

Probe CUST_40537_PI390587928

Source Contig U35_43613

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40537_PI390587928	Hv_44K_v2	ATCGGATTCGACAACATGCGTCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCACCA	297	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252634.1	2122	2e-24	450 - 509	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928
MLOC	AK249082.1	978	2e-24	615 - 674	100	60 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK249588.1	1172	2e-24	823 - 882	100	60 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK248995.1	983	2e-24	614 - 673	100	60 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
MLOC	AK250591.1	1609	2e-24	1296 - 1355	100	60 / 60	plus	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK364796	4776	2e-24	2418 - 2477	100	60 / 60	minus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928
MLOC	AK369652	2395	2e-24	2078 - 2137	100	60 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK360618	4810	2e-24	1428 - 1487	100	60 / 60	minus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
MLOC	MLOC_64679.1	900	2e-24	544 - 603	100	60 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
MLOC	MLOC_44795.3	1330	2e-24	574 - 633	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC21951 ABC35392 ABC36259 ABC45928
MLOC	MLOC_44795.2	1219	2e-24	869 - 928	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
MLOC	MLOC_44795.1	1069	2e-24	801 - 860	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
JLOC1	JLOC1_42494.1	1145	8e-25	662 - 721	100	60 / 60	plus
JLOC1	JLOC1_29060.3	3957	8e-25	596 - 655	100	60 / 60	plus
JLOC1	JLOC1_29060.2	3957	8e-25	596 - 655	100	60 / 60	plus
JLOC1	JLOC1_29061.2	3205	8e-25	2395 - 2454	100	60 / 60	minus
JLOC1	JLOC1_29061.1	4715	8e-25	3905 - 3964	100	60 / 60	minus
JLOC1	JLOC1_29060.1	6930	8e-25	2844 - 2903	100	60 / 60	plus
Harvest21	ABC40495	559	3e-25	298 - 357	100	60 / 60	plus
Harvest21	ABC40494	412	3e-25	298 - 357	100	60 / 60	plus
Harvest21	ABC36259	652	3e-25	206 - 265	100	60 / 60	plus	ABC36259
Harvest21	ABC00954	894	3e-25	221 - 280	100	60 / 60	minus
Harvest21	ABC00885	927	3e-25	513 - 572	100	60 / 60	plus
Harvest21	ABC00859	1211	3e-25	638 - 697	100	60 / 60	plus	ABC00859
Harvest21	ABC00838	827	3e-25	500 - 559	100	60 / 60	plus	ABC00838
Harvest21	ABC00814	924	3e-25	461 - 520	100	60 / 60	plus
Harvest21	ABC00626	741	3e-25	457 - 516	100	60 / 60	plus	ABC00626
Harvest21	ABC00497	695	3e-25	367 - 426	100	60 / 60	plus	ABC00497
Harvest21	ABC00453	324	3e-25	94 - 153	100	60 / 60	minus
Harvest21	ABC00346	283	3e-25	9 - 68	100	60 / 60	plus	ABC00346
Harvest21	ABC00932	425	1e-24	367 - 425	100	59 / 59	plus
Harvest21	ABC49600	297	1e-23	120 - 179	98	59 / 60	minus
Harvest21	ABC50496	360	5e-23	289 - 348	98	59 / 60	minus
Harvest21	ABC35392	424	6e-22	193 - 252	97	58 / 60	minus	ABC35392
Harvest21	ABC00965	505	6e-22	250 - 309	97	58 / 60	minus	ABC00965
Harvest35	U35_50753	858	3e-25	268 - 327	100	60 / 60	minus
Harvest35	U35_43614	559	3e-25	298 - 357	100	60 / 60	plus
Harvest35	U35_43613	412	3e-25	298 - 357	100	60 / 60	plus
Harvest35	U35_39986	652	3e-25	206 - 265	100	60 / 60	plus
Harvest35	U35_28013	406	3e-25	30 - 89	100	60 / 60	plus
Harvest35	U35_28005	366	3e-25	149 - 208	100	60 / 60	minus
Harvest35	U35_364	947	3e-25	513 - 572	100	60 / 60	plus
Harvest35	U35_350	831	3e-25	504 - 563	100	60 / 60	plus
Harvest35	U35_349	1114	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_248	772	3e-25	566 - 625	100	60 / 60	plus
Harvest35	U35_195	695	3e-25	367 - 426	100	60 / 60	plus
Harvest35	U35_179	324	3e-25	172 - 231	100	60 / 60	plus
Harvest35	U35_142	641	3e-25	209 - 268	100	60 / 60	plus

Contig Sequence (412 bp)

>U35_43613 412 Hv_44K_v2
TACCTACATAGTACAGCTATGGCCCCCACCGTGATGGCCTCGTCGGCCACCTCCGTCGCT
CCTTTCCAGGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCGAACGGTGCT
AGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGGTGCATGCAGGTGTGGCCCATCGAG
GGCATCAAGAAGTTCGAGACCCTGTCTTACTTGCCACCACTCAGCACCGACGCCACACAG
GTGCTCAACGAGGTGGAGGAGGTCAAGAAGGAGTACCCTGACGCGTATGTCCGCATCATC
GGATTCGACAACATGCGTCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCACCAGGC
TGCGAGGAGTCCGGCAAGGCATAAACAGCTCACTGACGATGGGCCACATATA

Homology of Contig U35_43613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None