- Probe CUST_34592_PI390587928
- Source Contig U35_28013
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_34592_PI390587928 | Hv_44K_v2 | ATCGGATTCGACAACATGCGTCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCACCA | 29 | GeneList: None MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 3.607 | 3.917 | 1.401 | 1.038 | 0.286 | 0.521 |
Raw | 4692.163 | 8501.557 | 2480.423 | 3244.330 | 273.136 | 566.941 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK252634.1 | 2122 | 2e-24 | 450 - 509 | 100 | 60 / 60 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928 |
MLOC | AK249082.1 | 978 | 2e-24 | 615 - 674 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
MLOC | AK249588.1 | 1172 | 2e-24 | 823 - 882 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
MLOC | AK248995.1 | 983 | 2e-24 | 614 - 673 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 |
MLOC | AK250591.1 | 1609 | 2e-24 | 1296 - 1355 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
MLOC | AK364796 | 4776 | 2e-24 | 2418 - 2477 | 100 | 60 / 60 | minus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928 |
MLOC | AK369652 | 2395 | 2e-24 | 2078 - 2137 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
MLOC | AK360618 | 4810 | 2e-24 | 1428 - 1487 | 100 | 60 / 60 | minus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601 |
MLOC | MLOC_64679.1 | 900 | 2e-24 | 544 - 603 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 |
MLOC | MLOC_44795.3 | 1330 | 2e-24 | 574 - 633 | 100 | 60 / 60 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC21951 ABC35392 ABC36259 ABC45928 |
MLOC | MLOC_44795.2 | 1219 | 2e-24 | 869 - 928 | 100 | 60 / 60 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 |
MLOC | MLOC_44795.1 | 1069 | 2e-24 | 801 - 860 | 100 | 60 / 60 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 |
JLOC1 | JLOC1_42494.1 | 1145 | 8e-25 | 662 - 721 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_29060.3 | 3957 | 8e-25 | 596 - 655 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_29060.2 | 3957 | 8e-25 | 596 - 655 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_29061.2 | 3205 | 8e-25 | 2395 - 2454 | 100 | 60 / 60 | minus | |
JLOC1 | JLOC1_29061.1 | 4715 | 8e-25 | 3905 - 3964 | 100 | 60 / 60 | minus | |
JLOC1 | JLOC1_29060.1 | 6930 | 8e-25 | 2844 - 2903 | 100 | 60 / 60 | plus | |
Harvest21 | ABC40495 | 559 | 3e-25 | 298 - 357 | 100 | 60 / 60 | plus | |
Harvest21 | ABC40494 | 412 | 3e-25 | 298 - 357 | 100 | 60 / 60 | plus | |
Harvest21 | ABC36259 | 652 | 3e-25 | 206 - 265 | 100 | 60 / 60 | plus | ABC36259 |
Harvest21 | ABC00954 | 894 | 3e-25 | 221 - 280 | 100 | 60 / 60 | minus | |
Harvest21 | ABC00885 | 927 | 3e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00859 | 1211 | 3e-25 | 638 - 697 | 100 | 60 / 60 | plus | ABC00859 |
Harvest21 | ABC00838 | 827 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | ABC00838 |
Harvest21 | ABC00814 | 924 | 3e-25 | 461 - 520 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00626 | 741 | 3e-25 | 457 - 516 | 100 | 60 / 60 | plus | ABC00626 |
Harvest21 | ABC00497 | 695 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus | ABC00497 |
Harvest21 | ABC00453 | 324 | 3e-25 | 94 - 153 | 100 | 60 / 60 | minus | |
Harvest21 | ABC00346 | 283 | 3e-25 | 9 - 68 | 100 | 60 / 60 | plus | ABC00346 |
Harvest21 | ABC00932 | 425 | 1e-24 | 367 - 425 | 100 | 59 / 59 | plus | |
Harvest21 | ABC49600 | 297 | 1e-23 | 120 - 179 | 98 | 59 / 60 | minus | |
Harvest21 | ABC50496 | 360 | 5e-23 | 289 - 348 | 98 | 59 / 60 | minus | |
Harvest21 | ABC35392 | 424 | 6e-22 | 193 - 252 | 97 | 58 / 60 | minus | ABC35392 |
Harvest21 | ABC00965 | 505 | 6e-22 | 250 - 309 | 97 | 58 / 60 | minus | ABC00965 |
Harvest35 | U35_50753 | 858 | 3e-25 | 268 - 327 | 100 | 60 / 60 | minus | |
Harvest35 | U35_43614 | 559 | 3e-25 | 298 - 357 | 100 | 60 / 60 | plus | |
Harvest35 | U35_43613 | 412 | 3e-25 | 298 - 357 | 100 | 60 / 60 | plus | |
Harvest35 | U35_39986 | 652 | 3e-25 | 206 - 265 | 100 | 60 / 60 | plus | |
Harvest35 | U35_28013 | 406 | 3e-25 | 30 - 89 | 100 | 60 / 60 | plus | |
Harvest35 | U35_28005 | 366 | 3e-25 | 149 - 208 | 100 | 60 / 60 | minus | |
Harvest35 | U35_364 | 947 | 3e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
Harvest35 | U35_350 | 831 | 3e-25 | 504 - 563 | 100 | 60 / 60 | plus | |
Harvest35 | U35_349 | 1114 | 3e-25 | 516 - 575 | 100 | 60 / 60 | plus | |
Harvest35 | U35_248 | 772 | 3e-25 | 566 - 625 | 100 | 60 / 60 | plus | |
Harvest35 | U35_195 | 695 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus | |
Harvest35 | U35_179 | 324 | 3e-25 | 172 - 231 | 100 | 60 / 60 | plus | |
Harvest35 | U35_142 | 641 | 3e-25 | 209 - 268 | 100 | 60 / 60 | plus |
Contig Sequence (406 bp)
>U35_28013 406 Hv_44K_v2 CGAGGTACCCTGACGCGTATGTCCGCATCATCGGATTCGACAACATGCGTCAGGTGCAGT GCGTCAGCTTCATCGCCTTCAAGCCACCAGGCTGCGAGGAGTCCGGCAAGGCATCGGCTC TGGCTTGGGTTCAGGTTTTGGCATCGGCTCGGGCCTGGGCTCTGGCTTTGGTTCGGGTTT TGGCATCGGTTTAGGCTCAGGCTTCATCGGCTCGGGTTTGGGCTCTGGCTTTGGTTCGGG TTTTGGCATCGGCTCTGGTTTGGGCTCTGGCTTTGGTTCGGGTTTTGGCATCGGCTCTGG TTTGGGCTCTGGCTTTGGTTCGGGTTTTGGCATCGGCTCTGGTTTGGGCTCAGGCTTAGG CTCAGGTTTTGGCATTGGCTCTGGCTTGGGCTCAGGCTTAGGCTCA
Homology of Contig U35_28013 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |