barSeed - Barley Seed Development Database

Probe CUST_25002_PI390587928

Source Contig U35_41766

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25002_PI390587928	Hv_44K_v2	GTTGTATCGTTGTGTATTATATTTGCTATGGAGCTATGTATGTATGGATGCTATGGAACT	53	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368259	935	2e-24	798 - 857	100	60 / 60	plus	ABC02851
MLOC	AK364404	3071	2e-24	2934 - 2993	100	60 / 60	plus	ABC15701 ABC22231 ABC31461 ABC31966 ABC36951
MLOC	MLOC_29143.3	329	2e-24	240 - 299	100	60 / 60	plus	ABC15701
MLOC	MLOC_29143.1	604	2e-24	515 - 574	100	60 / 60	plus	ABC15701
MLOC	MLOC_29143.2	912	2e-24	823 - 882	100	60 / 60	plus	ABC15701
MLOC	MLOC_1085.1	222	2e-23	121 - 178	100	58 / 58	plus	ABC12319 ABC15629 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947 ABC47127
MLOC	AK369286	838	7e-23	700 - 756	100	57 / 57	plus	ABC08764 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
MLOC	AK371747	2557	7e-23	2419 - 2475	100	57 / 57	plus	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC	AK364221	2939	7e-23	2817 - 2873	100	57 / 57	plus	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC	AK365586	3055	7e-23	2976 - 3032	100	57 / 57	plus	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC	AK366344	2696	7e-23	2589 - 2648	98	59 / 60	plus	ABC06657 ABC08195
MLOC	AK361698	2007	7e-23	1916 - 1972	100	57 / 57	plus	ABC26165 ABC40364 ABC40947
MLOC	AK362272	2335	7e-23	2194 - 2253	98	59 / 60	plus	ABC06657 ABC08195
MLOC	AK369950	3427	7e-23	3348 - 3404	100	57 / 57	plus	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
MLOC	AK367312	2059	7e-23	1891 - 1947	100	57 / 57	plus	ABC08511 ABC12319 ABC12520 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC	AK358152	2916	7e-23	2825 - 2881	100	57 / 57	plus	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC	AK356842	2274	7e-23	2183 - 2239	100	57 / 57	plus	ABC08511 ABC14874 ABC15629 ABC26165 ABC38338 ABC39738 ABC40364 ABC40947 ABC47127
MLOC	MLOC_78574.1	206	7e-23	77 - 133	100	57 / 57	minus	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
MLOC	MLOC_74634.1	256	7e-23	79 - 138	98	59 / 60	minus	ABC15701 ABC31966 ABC36951
MLOC	MLOC_3592.1	228	7e-23	151 - 207	100	57 / 57	plus	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
MLOC	MLOC_78888.1	258	3e-22	45 - 103	98	58 / 59	minus	ABC15701 ABC22231 ABC31966 ABC36951
MLOC	AK355775	1429	3e-21	1350 - 1406	98	56 / 57	plus	ABC08511 ABC15629 ABC38338 ABC39738 ABC40364 ABC40947 ABC47127
MLOC	AK365596	1810	3e-21	1731 - 1787	98	56 / 57	plus	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC	AK365735	2167	3e-21	2029 - 2085	98	56 / 57	plus	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC	AK369022	2472	3e-21	2242 - 2298	98	56 / 57	plus	ABC08511 ABC11812 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC	AK363441	2640	3e-21	2502 - 2558	98	56 / 57	plus	ABC08511 ABC12319 ABC12682 ABC15629 ABC24189 ABC26165 ABC38338 ABC39103 ABC39738 ABC40107 ABC40364 ABC40947
MLOC	AK367942	3453	3e-21	3241 - 3297	98	56 / 57	plus	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC	MLOC_73847.1	229	3e-21	56 - 115	97	58 / 60	minus	ABC15701 ABC31966
MLOC	MLOC_61687.1	305	3e-21	112 - 168	98	56 / 57	minus	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC40107 ABC40947
MLOC	MLOC_31382.1	299	3e-21	105 - 161	98	57 / 58	plus	ABC12319 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947
MLOC	MLOC_7626.1	195	3e-21	84 - 140	98	56 / 57	plus	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC	MLOC_1537.1	136	3e-21	64 - 120	98	56 / 57	minus	None
JLOC1	JLOC1_19449.2	421	8e-25	332 - 391	100	60 / 60	plus
JLOC1	JLOC1_19449.1	368	8e-25	279 - 338	100	60 / 60	plus
JLOC1	JLOC1_48449.1	180	1e-23	18 - 77	98	59 / 60	minus
JLOC1	JLOC1_54584.1	251	4e-23	140 - 196	100	57 / 57	plus
JLOC1	JLOC1_52369.1	194	4e-23	66 - 122	100	57 / 57	minus
JLOC1	JLOC1_49753.1	240	4e-23	77 - 136	98	59 / 60	minus
JLOC1	JLOC1_27495.1	160	4e-23	87 - 143	100	57 / 57	plus
JLOC1	JLOC1_2160.1	224	4e-23	149 - 205	100	57 / 57	plus
JLOC1	JLOC1_40314.1	308	2e-21	113 - 169	98	56 / 57	minus
JLOC1	JLOC1_20621.1	298	2e-21	105 - 161	98	57 / 58	plus
JLOC1	JLOC1_5042.1	196	2e-21	85 - 141	98	56 / 57	plus
JLOC1	JLOC1_1827.1	257	2e-21	192 - 248	98	56 / 57	plus
JLOC1	JLOC1_938.1	131	2e-21	59 - 115	98	56 / 57	minus
Harvest21	ABC36951	557	3e-25	54 - 113	100	60 / 60	minus	ABC36951
Harvest21	ABC15701	815	3e-25	96 - 155	100	60 / 60	minus	ABC15701
Harvest21	ABC15185	885	3e-25	54 - 113	100	60 / 60	minus
Harvest21	ABC50766	487	1e-23	126 - 182	100	57 / 57	minus
Harvest21	ABC50593	500	1e-23	58 - 117	98	59 / 60	minus
Harvest21	ABC40947	589	1e-23	96 - 152	100	57 / 57	minus	ABC40947
Harvest21	ABC40364	524	1e-23	53 - 109	100	57 / 57	minus	ABC40364
Harvest21	ABC40107	559	1e-23	94 - 150	100	57 / 57	minus	ABC40107
Harvest21	ABC31966	497	1e-23	96 - 155	98	59 / 60	minus	ABC31966
Harvest21	ABC52943	321	6e-22	202 - 258	98	56 / 57	plus
Harvest21	ABC34342	632	6e-22	497 - 557	97	59 / 61	plus
Harvest21	ABC26165	551	6e-22	42 - 98	98	56 / 57	minus	ABC26165
Harvest21	ABC15629	1515	6e-22	1364 - 1420	98	56 / 57	plus	ABC15629
Harvest21	ABC12320	661	6e-22	445 - 501	98	56 / 57	plus
Harvest21	ABC08511	614	6e-22	42 - 98	98	56 / 57	minus	ABC08511
Harvest21	ABC12319	1023	8e-21	918 - 972	98	54 / 55	plus	ABC12319
Harvest35	U35_48779	555	3e-25	94 - 153	100	60 / 60	minus
Harvest35	U35_41766	557	3e-25	54 - 113	100	60 / 60	minus
Harvest35	U35_14698	927	3e-25	773 - 832	100	60 / 60	plus
Harvest35	U35_7755	815	3e-25	661 - 720	100	60 / 60	plus
Harvest35	U35_48731	487	1e-23	126 - 182	100	57 / 57	minus
Harvest35	U35_48637	500	1e-23	58 - 117	98	59 / 60	minus
Harvest35	U35_47213	643	1e-23	53 - 109	100	57 / 57	minus
Harvest35	U35_43552	524	1e-23	53 - 109	100	57 / 57	minus
Harvest35	U35_43449	559	1e-23	94 - 150	100	57 / 57	minus
Harvest35	U35_41272	703	1e-23	95 - 151	100	57 / 57	minus
Harvest35	U35_39649	753	1e-23	94 - 150	100	57 / 57	minus
Harvest35	U35_13615	867	1e-23	712 - 768	100	57 / 57	plus
Harvest35	U35_48125	486	6e-22	57 - 113	98	56 / 57	minus
Harvest35	U35_45434	663	6e-22	445 - 501	98	56 / 57	plus
Harvest35	U35_43044	542	6e-22	454 - 510	98	56 / 57	plus
Harvest35	U35_38388	632	6e-22	497 - 557	97	59 / 61	plus
Harvest35	U35_17790	1397	6e-22	1302 - 1358	98	56 / 57	plus
Harvest35	U35_7465	1045	6e-22	894 - 950	98	56 / 57	plus
Harvest35	U35_2584	1023	8e-21	918 - 972	98	54 / 55	plus

Contig Sequence (557 bp)

>U35_41766 557 Hv_44K_v2
TTTTTTTTTTTTTTTTTACATTCAAAATTCCATAGCATCCATATATACATATTAGTTCCA
TAGCATCCATACATACATAGCTCCATAGCAAATATAATACACAACGATACAACCCAAATC
TAAAGGGCAGGGACAACAGTAATCCCAGCCTATAGATCTTTGACCCCATCCAGAAAATGG
GTTCAATTTCATTGCTTGTTCTTTGGTTACCCTACCAGGCTTGTTGAGATCGTTCTATGC
CACTGCATATGCTTATCAATCATGACACGTTTGATAAGTTTAGGGTCATCTTCAGTCCAC
CCATCAACTGCACTTATTGTCACAATAACCATATCAGCTCCTAGTGCAGGAGTCTCTGAT
CGTTCTACACCTGGTTTAGAGCAAAACAGAAGATAAGCGTCAAGACTAACAACACCATCA
CCATTATTCAATTTACAAAATTAAATATACTAGTCGTCAACCCGTGCATTCGCGCGGGCT
AGTTTGATAACCTATGTTATAAAATATGAAATTCAACTTTTAATTCCATGGAGTAATGAA
ATTGAACGGTCCCGCTT

Homology of Contig U35_41766 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None