barSeed - Barley Seed Development Database

Probe ABC08195

Source Contig ABC08195

barSeed

Links

Affymetrix Source Sequence (2362 bp)

>ABC08195 2362
GCGAAGTCATATGAAGAACGCTGCTCGCTTGGACAGCGAGATAATTTACGACAGGGACTT
TGATTATGATTACTTCGGCTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAGCTTGGTGG
AGTTGTTGTCGAGAGGCCGCAGCACATGTTAATGAGGGTTTCAGTAGGGATACACAAGGA
TGACATTGACTCTGCCATCAGGACTTACCATCTCATGTCCCAGCGCTGGTTTACTCATGC
TTCGCCAACCCTTTTCAATGCTGGCACCCCAAGGCCTCAGCTGAGCAGCTGTTTCCTTAT
CTGCATGAAAGATGATAGCATCGAGGGAATCTATGATACTCTCAAGGAATGTGCTGTCAT
AAGCAAATCTGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCTACTGGGAGCTA
TATTCGAGGAACAAATGGAACATCCAATGGGATAGTTCCTATGTTACGTGTCTTCAATGA
CACTGCTCGTTATGTAGATCAAGGAGGAGGCAAGAGAAAGGGTGCCTTTGCTGTATACCT
GGAGCCCTGGCATGCTGATATTTTTGAGTTCCTTGATCTGAGGAAGAACCATGGCAAGGA
GGAGAACCGTGCGAGGGATCTTTTCTTTGCTCTCTGGGTTCCTGATCTATTCATGCAAAG
AGTGCAAAATAATGAGGATTGGTCCCTGTTTTGTCCTAATGAAGCTCCAGGGTTGGCTGA
TTGCTGGGGTGAGAAGTTTGAGGAATTGTACAAGAAATATGAGAAAGCAGGCAAAGCGAA
AAAGGTCATTCCAGCACAGACCCTCTGGTTTGACATTTTGAAGGCACAGATAGAAACTGG
CACACCTTATATGCTCTATAAGGATTCATGTAATAGGAAAAGTAACCAACAGAATCTGGG
CACAATCAAATCTTCAAACTTGTGCACTGAGATAATTGAGTTTACAAGTCCAGAGGAAAC
TGCTGTCTGCAACTTAGCATCTATTGCTCTGCCACGTTTTGTACGGGAGAAGGGTGTCCC
AATAGAGTCCCATCCATCTAAGCTTGCTGGTAGCAATGGATCAAAAAATAGATACTTTGA
CTTTGACAAGTTAGGCGAGGTTACTTCAACTGTTACTTTCAATCTAAACAAAATAATCGA
AATGAACTATTATCCTGTTGAAACTGCAAGGAGGTCTAATATGCGACACAGGCCAATTGG
CATAGGGGTTCAAGGCTTGGCAGATACGTTCATGTTGCTTGGCATGCCATTTGATTCACC
TGAGGCTCAGCAATTGAATAGGGATATTTTTGAAACTATTTACTATCATGCTCTGAAAGC
TTCTGCCGAATTGGCTGCTAAAGAAGGTCCTTATGAAACATATGAAGGGAGCCCTGTCAG
CAAGGGCATTATCCAACCTGACATGTGGAATGTAGTGCCATCGACCAGATGGAACTGGCC
AACTTTAAGGGAAACTATTGCTAAAGTTGGAGTAAGAAACTCTCTTCTGGTGGCTCCAAT
GCCCACTGCTTCCACCAGTCAGATTCTTGGCAACAATGAGTGCTTTGAACCCTACACATC
TAACATCTACAGTCGGCGGGTTCTTAGTGGGGAGTTTGTTGTGGTTAACAAGCATCTTCT
CCATGACTTGACTGAGATGGGTATCTGGACACCTGCTTTGAAAAACAAGATAATTTATGA
AGATGGTTCTATTCAGAAGATGGAAGAAATCCCTGATGATCTTAAAGCAATTTACAAGAC
TGTTTGGGAGATCAAGCAGAAAACTCTGGTTGACATGGCTGTTGATCGTGGGTGCTACAT
TGACCAGAGCCAGAGCCTTAATGTCCACATGGATCAACCAAACTTTGCAAAGCTAACTTC
GTTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTACTATTTGAGAACAAG
GGCAGCTGCTGATGCAATCAAGTTTACTGTGGATACTGGCTTTCTGAAGGTCAATGGGGA
TGCTAATGGCACTAATGGCACTGCTAATGGCAAACTAGCAGAGGAGGACGATGAAGCCAA
AATGGCGCAAGTTGTCTGCTCCTTGAACAACCGGGAAGAGTGCCTGGCATGCGGAAGTTA
GACGGATCTGTTGCATCTATTTTTCTCTTAACCAAGGCAGCATTACACAACCAAACGGTC
TGATCATTGGCATTGAATAATGCGAGAAGAGAGTCGTTTATGTAGGTGCGGTTGTGTTTA
AGAACTGATGAGTTCCTTTGCTGGGCAGCCCTTGATGGCTGAGTTGCCAATGTTGGCTTG
TTATTTGTACTATCTAAAAACATGGGTTGCTGCAGCTGTATATATATGTATCATTGTTTG
TGTTAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248176.1	2795	0.0	452 - 2795	99	2342 / 2344	CUST_6271_PI390587928 CUST_16743_PI390587928 CUST_37164_PI390587928	ABC08195 ABC14526 ABC49974
MLOC_47103.2	1524	0.0	14 - 1524	99	1509 / 1511	CUST_16743_PI390587928 CUST_37164_PI390587928	ABC08195 ABC14526 ABC49974
MLOC_47103.1	1527	0.0	14 - 1527	99	1509 / 1514	CUST_16743_PI390587928 CUST_37164_PI390587928	ABC08195 ABC14526 ABC49974
MLOC_47103.3	1307	0.0	187 - 1305	100	1119 / 1119	CUST_16743_PI390587928	ABC08195 ABC14526
MLOC_15081.1	2800	0.0	456 - 2420	84	1653 / 1967	CUST_20589_PI390587928 CUST_37165_PI390587928	ABC08195 ABC14526
MLOC_21235.1	1273	0.0	3 - 601	99	597 / 599	CUST_6271_PI390587928	ABC08195
MLOC_21235.2	1023	0.0	1 - 576	99	571 / 576	CUST_6271_PI390587928	ABC08195
MLOC_15081.2	2748	5e-95	247 - 631	83	320 / 385	CUST_20589_PI390587928	ABC08195 ABC14526
AK362272	2335	3e-162	1586 - 1937	96	341 / 355	CUST_426_PI390587928 CUST_25002_PI390587928	ABC06657 ABC08195
AK366344	2696	4e-161	1993 - 2332	97	330 / 340	CUST_426_PI390587928 CUST_5960_PI390587928 CUST_25002_PI390587928	ABC06657 ABC08195
MLOC_30570.1	190	5e-90	1 - 187	99	185 / 187	None	ABC08195
MLOC_25113.1	176	6e-75	14 - 176	98	160 / 163	None	ABC08195
MLOC_3283.1	161	2e-70	1 - 158	97	154 / 158	None	ABC08195