barSeed - Barley Seed Development Database

Probe CUST_6271_PI390587928

Source Contig U35_21436

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6271_PI390587928	Hv_44K_v2	CTGCTGTCTCCGCTGATTGCCGAGGACATCTACGAAGTCATCATGAAGAACGCTGCTCGC	451	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.498	1.054	1.568	1.184	0.725	0.558
Raw	102.315	99.733	146.760	161.670	36.759	31.893

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248176.1	2795	2e-24	420 - 479	100	60 / 60	plus	ABC08195 ABC14526 ABC49974
MLOC	MLOC_21235.2	1023	2e-24	549 - 608	100	60 / 60	minus	ABC08195
MLOC	MLOC_21235.1	1273	2e-24	574 - 633	100	60 / 60	minus	ABC08195
JLOC1	JLOC1_14739.1	1191	8e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_21436	511	3e-25	452 - 511	100	60 / 60	plus
Harvest35	U35_2243	2676	3e-25	219 - 278	100	60 / 60	plus

Contig Sequence (511 bp)

>U35_21436 511 Hv_44K_v2
ATTTAAACCGCCCCGCGCGAGGCCCCAAACCCTACGACGGCACCACCAACCACCCCCCCC
TCCCCTTGTCCCCTCACCCGATCCACAACACCCCGGCGGCGGCGGCGGAAGGCCACCGAA
GATGTACGTCGTGAAGCGGGACGGGCGGACGGAGACGGTGCACTTCGACAAGATCACGGC
GCGGCTCAAGAAGCTCAGCTACGGGCTCAGCCAGGAGCACTGCGACCCGGTGCTCGTCGC
GCAGAAGGTCTGCGCCGGCGTCTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGC
CGCCGAGACCGCCGCCGCGCTCACCGCCTCCCACCCCGACTATGCCTCCCTCGCGGCCAG
GATTGCCGTGTCCAACCTGCACAAGAACACCAAGAAGTCCTTCTCCGAGACGATTAAGGA
CATGTACCTGCACTACAACGAGAGATCTGGGCTGCTGTCTCCGCTGATTGCCGAGGACAT
CTACGAAGTCATCATGAAGAACGCTGCTCGC

Homology of Contig U35_21436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g07210.1	815	1e-65	protein\|ribonucleoside-diphosphate reductase large subunit, putative, expressed
Brachypodium v1_2	Bradi1g48170.1	815	3e-68
Arabidopsis v10	AT2G21790.1	816	1e-63	\| Symbols: R1, RNR1, CLS8, ATRNR1 \| ribonucleotide reductase 1 \| chr2:9293529-9297580 FORWARD LENGTH=816