- Gene BART1_0-u39181
- Gene IDBART1_0-u39181
- Location chr5H: 602220146 - 602228028
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU5Hr1G096780 | 92.2 | - | - | 7267 | -616 | Containing |
Transcripts from Gene BART1_0-u39181
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u39181.001 | 5579 | 5579 bp MSTRG.39181.1 MSTRG.39181 |
| BART1_0-u39181.002 | 5515 | 5515 bp MSTRG.39181.2 MSTRG.39181 |
| BART1_0-u39181.003 | 4973 | 4973 bp MSTRG.39181.3 MSTRG.39181 |
| BART1_0-u39181.004 | 5044 | 5044 bp MSTRG.39181.4 MSTRG.39181 |
| BART1_0-u39181.005 | 5258 | 5258 bp MSTRG.39181.5 MSTRG.39181 |
| BART1_0-u39181.006 | 4161 | 4161 bp MSTRG.39181.6 MSTRG.39181 |
| BART1_0-u39181.007 | 4771 | 4771 bp MSTRG.39181.7 MSTRG.39181 |
| BART1_0-u39181.008 | 4183 | 4183 bp MSTRG.39181.8 MSTRG.39181 |
| BART1_0-u39181.009 | 4268 | 4268 bp MSTRG.39181.9 MSTRG.39181 |
| BART1_0-u39181.010 | 4082 | 4082 bp MSTRG.39181.10 MSTRG.39181 |
| BART1_0-u39181.011 | 4701 | 4701 bp MSTRG.39181.11 MSTRG.39181 |
| BART1_0-u39181.012 | 3735 | 3735 bp MSTRG.39181.12 MSTRG.39181 |
| BART1_0-u39181.013 | 3964 | 3964 bp MSTRG.39181.13 MSTRG.39181 |
Exon Structure of BART1_0-u39181
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +2 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +2 | 0.0 | 1424 | 784/1010 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0016740 | transferase activity |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons