- Transcript BART1_0-u39181.009
- Transcript IDBART1_0-u39181.009
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220276 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224386 | 602224150 | - |
| chr5H | 4 | 602224952 | 602224892 | - |
| chr5H | 5 | 602225112 | 602225079 | - |
| chr5H | 6 | 602226973 | 602226266 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.368384 | 2.02594 | 0 |
| morex | ETI | 0 | 0.877755 | 0.0768328 |
| morex | LEA | 0 | 0.686853 | 0 |
| morex | EPI | 0 | 0 | 0.331093 |
| morex | ROO | 0.000000024101 | 0.722136 | 0.721863 |
| morex | ROO2 | 0.874957 | 1.11236 | 0 |
| morex | NOD | 0 | 2.17114 | 0.00000500797 |
| morex | RAC | 0.387862 | 0.284049 | 0.730287 |
| morex | INF1 | 0.435475 | 1.30229 | 0.947145 |
| morex | INF2 | 0.279569 | 0.172937 | 0.553048 |
| morex | CAR5 | 0.463992 | 1.28892 | 1.10744 |
| morex | CAR15 | 0 | 0.256041 | 0.320228 |
| morex | LEM | 0.877706 | 0 | 0.5864 |
| morex | LOD | 1.19348 | 1.23277 | 2.83535 |
| morex | PAL | 0.00000219708 | 1.52889 | 1.73233 |
| morex | SEN | 0 | 0.193 | 0.00110337 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +3 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +3 | 0.0 | 1424 | 784/1010 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4268 bp)
>BART1_0-u39181.009 4268 150831_barley_pseudomolecules TTGAGTTGGTGATTGATGAGAGAGAAAGACGGAGGGAGAGGGACAAGGGGTGGGGTGATG GGGAGGATCAGCATCAGGGGGGCGGAGAGAGAGAGAGAGAATATCAGATGTCAACAAATC TGCTGTCCTTGCGGCTCGTTTAGAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTT CCCTTCCACCAGAGGAGAGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGC CAATCCAAAACCCCCAAAAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTG AGAGAGAGAACAAACCGAGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCG TTCGTTCGTTCGTTCCGGCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGG CCTGGCCCCAGCAAATCCGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTATCC TCCGCCCCGATCGCCCCCCTGCCGCCGCGAGAAAGATTTGTTTTTTGTTTTGTTCTACGA GTACTAGGATAGTATAGATACATAAATATCCTGTCTTGGTTGGGTGGTGCGGGGTTTCTC GGGGCATGGCCGCGGCGGCGGTGCCGGACAGGATGCTCGCTCGCCGAATGCTGCGGGTCG TCAGGCTCAACCCGCTGCAGCGCACTGCCAACAATCCTTCTCCCTGAGGTTATTTCTCTT GAAGTGCCATTCAGATTGGGAGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAGCATG ATTGCTACATGCCCATTGTTTTGACTGTAACACTAATGGGAGCTAAAGTGGAAGCTGAGA GTTACAATACTGGATATTATGCCACAGGGGATCTGCACATGGACTCAAATGGTTGGCGCT CTCCATACTATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCATGACAAAGC AGGCAGATGGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCTTTCACATG AAGCTATGTTTAGACAGCAGGTTTATGAACTGCACCGTGTTTACAAAATACAGAGAGACC TGATGAAGCATTATGAAAGCAAAGACACATATGCATACCCAGTACTGGCAGATGCATCAC AGACAAATTCATCATCACAAGTTCCACCAAATGGCTCAAAGATGATATGGCAGATGCCTC TAGGGGCCAAAACATACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAACCACTCCT TGAAGTTCCTTAGTGATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTG TTGCTTTAAATACCAAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCATTATATAG ATGATGACAACACATCAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTCGGGTACAA AACTGCCGAATGATGCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTG ATAATAGCTCAACCTCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCATGTCGCTG ACCTGAATGAGCCAATTACTGGGATGCATATGGGTGGAACAAACGGGTCAGTACCCAGAG GTCTTCCGTATACCTTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTA ACTTTGGTTTCAATAAAGAATACTCCAAAGAGAAGCATACCGATGAAGGAACGAGCTCAA ATTTCCTCGATGCAAGTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGATAAAGGAA AACAAGTCAGCAGTCAATCTTTTTTTACACCCAGATACAGCAATACTGATCTGCAAAAAT CCTTCAAGGTTGCTGATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAAAATA GTTCAGTTGGATGGTTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTTGCTA GACTTGACCATCCACATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATTCCTC ACATAGACCATCCTTCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCA GTGTTATCAACAATGCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTTAATT CATACAAGAGTCCTGGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATTGGAC CTTCGATTCATAAGCTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTTCCGC TTGATCCATTTTCCGCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGC AAAGGAACTGCCTGATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGC CCACAAGCACCAAGGGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGTCCAG AAGAGCTTGTAGAACAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGG GATCAGTATTTGGGATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACAGGTT TGGAAAAGCAAAGGAAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAAAACA ACAACGACTTGACGGGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCGACGT CCCTAGGTTGCAGAATTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACTTGGC TGGTATGTAATAAGACTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAGAAAC CCTTTGACAGAGATGAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCA GAAATTTATTTGATCTGAATGATGACATACCACATGAAGATAACTCAGAGTCATCAGTAG TGTCACATGAATGCGACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTTTTGA TTGACTTGGAAGAAATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAGGAAT GCACACCTTCTGGTACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTA TGGATGCAGCGCAGATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGCACAC CCGATGATATGCTGCAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCATGCCG ATGAGCAAGCAGAAGCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGATTCAT TTGAAGCCTTGACACTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCGGAAC CACCACTGACAGACGATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAA GAGGACCGCAAAGGAAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCTGGTC TCTCGTCACTTTCCCGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTAGTAC AGGCATCTGGTGGATCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAA GAGGTAGAAAGCCCCGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGG CCGAGGTGAGCCCGCCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCA TGGTTAGCTGGGGACGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTA ACATCGCGGCTTCGTCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTCACGATCAT GTACTTGGGTTCGGGTTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTATAAAGGTAA AAAATCACAGCCATGAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCA GAGATTTCATGCCTTTTCGGGTCGAAACATGGTGTACATTTTTTTCTATAATAAATTCTT AAACTAGTCTATATGTGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCC TGAGGGGCCTGCTGTAATTCTTGAGATAGTGGCGAGGTACCTTGACTGTCCGGTATTCAG AAATCAAAAAGGCTAATCGGTGTAGTTCTATATAGTTCTTTTAAATCTTGTTTTGTTTTG TGTTGTGCAAGTTGCTGCTTCATTTGGTTGCAATCTTTGCTTCGCAGCCTGTACAAGTTG GAACGCCG
Protein Sequence (1003 aa)
>BART1_0-u39181.009 1003 150831_barley_pseudomolecules MPIVLTVTLMGAKVEAESYNTGYYATGDLHMDSNGWRSPYYEDKPSNGQLYNGFMTKQAD GYSEYDNETLKRTMLSHEAMFRQQVYELHRVYKIQRDLMKHYESKDTYAYPVLADASQTN SSSQVPPNGSKMIWQMPLGAKTYGEATVAVHTDTNHSLKFLSDGSVLPSPDGFPSNGVAL NTKQGVIDLELPADHYIDDDNTSDDKPIDFLGVDSGTKLPNDAGVTFSGAEGLGRFSDNS STSGLLATNKPGGCHVADLNEPITGMHMGGTNGSVPRGLPYTLENSWRQSAVRSGTANFG FNKEYSKEKHTDEGTSSNFLDASAKLRQEEKPLIDKGKQVSSQSFFTPRYSNTDLQKSFK VADGRSATNEFIYHGQNSSVGWFSKGPMGASAVNNFARLDHPHHSSIGTLVAPISIPHID HPSVASPIGSCTVDPRSSVINNAFQRVPSFNGSSTVNSYKSPGAVTQSIGPSSHSIGPSI HKLKRFDNLDGSYFGFPLDPFSASRSRQQVAMSSELEQRNCLMFEHSAARQSLGYTQPTS TKGTKNFNLNEALSDGPEELVEQDGRSVGSLQHSKGEGSVFGISWLKNRATCADPTGLEK QRKVFGHSNGTATDTKNNNDLTGTTPIVCNLSDSASTSLGCRIKIDDASDVITDRTWLVC NKTEESTTRHLPLSCQKPFDRDEQTAEGVVKKSGAVIRNLFDLNDDIPHEDNSESSVVSH ECDVASLQNNHAKRTFLIDLEEMPACEDGAAWTSQQECTPSGTLDACKEADMCSPSAMDA AQIILALSTDVLTTTGTPDDMLQWFAELAISSTDAHADEQAEAQGCINNFSDDGLDSFEA LTLKLEECNTDERWTPEPPLTDDEQAVSAVNLLSKPKRGPQRKRRQKRDFQKDILPGLSS LSRPKIIEDIQLIEGLVQASGGSWESSFTRRARCGRTRGRKPRKNQPATVEIEAEAEAEV SPPLKPDSIGLEADERGMVSWGRTTRRCRKPRCPSGSNIAASS