- Transcript BART1_0-u39181.013
- Transcript IDBART1_0-u39181.013
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220366 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224417 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602226836 | 602226500 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.915188 | 3.42117 | 5.79159 |
| morex | ETI | 2.63936 | 1.5647 | 2.34592 |
| morex | LEA | 3.29744 | 1.88512 | 2.68793 |
| morex | EPI | 4.1707 | 5.31453 | 2.47967 |
| morex | ROO | 2.1081 | 1.99323 | 1.01697 |
| morex | ROO2 | 0.968237 | 1.10725 | 2.55705 |
| morex | NOD | 3.36226 | 5.36483 | 4.26755 |
| morex | RAC | 9.33874 | 5.69878 | 5.50275 |
| morex | INF1 | 4.94576 | 6.12858 | 5.0466 |
| morex | INF2 | 6.32109 | 6.71231 | 5.88122 |
| morex | CAR5 | 4.11056 | 5.04144 | 3.24351 |
| morex | CAR15 | 0.391752 | 0 | 0.297906 |
| morex | LEM | 5.07073 | 4.60924 | 7.07871 |
| morex | LOD | 11.895 | 9.6812 | 12.3524 |
| morex | PAL | 5.66594 | 7.81656 | 9.32055 |
| morex | SEN | 2.43362 | 2.29159 | 2.18568 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +2 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +2 | 0.0 | 1421 | 781/1008 (77%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3964 bp)
>BART1_0-u39181.013 3964 150831_barley_pseudomolecules GTTTAGAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCCCTTCCACCAGAGGAG AGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCAATCCAAAACCCCCAA AAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAGAGAGAGAACAAACCG AGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTTCGTTCGTTCGTTCCG GCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCCTGGCCCCAGCAAATC CGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTTATTTCTCTTGAAGTGCCATT CAGATTGGGAGGTAGTATTGATTCAGCTGAGCAAGTCGAGCTGTCTAGTTAGCTCAAAGC ATTGAAGATTGGAATTTTACACGTGCATTGCATTAACACTGTGATTTCCCTTTGGTGCCC TGTGATGTGATGATCAGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAGCATGATTGC TACATGCCCATTGTTTTGTTCAGCATCATTTGACTGGTCTGTTCAACAGACTGTAACACT AATGGGAGCTAAAGTGGAAGCTGAGAGTTACAATACTGGATATTATGCCACAGGGGATCT GCACATGGACTCAAATGGTTGGCGCTCTCCATACTATGAGGATAAGCCATCAAATGGGCA GTTGTACAATGGCTTCATGACAAAGCAGGCAGATGGTTATTCAGAGTACGACAACGAAAC GCTGAAGCGCACAATGCTTTCACATGAAGCTATGTTTAGACAGCAGGTTTATGAACTGCA CCGTGTTTACAAAATACAGAGAGACCTGATGAAGCATTATGAAAGCAAAGACACATATGC ATACCCAGTACTGGCAGATGCATCACAGACAAATTCATCATCACAAGTTCCACCAAATGG CTCAAAGATGATATGGCAGATGCCTCTAGGGGCCAAAACATACGGAGAAGCTACTGTTGC AGTGCACACTGATACAAACCACTCCTTGAAGTTCCTTAGTGATGGCAGTGTTCTGCCCTC TCCAGATGGATTCCCCTCAAATGGTGTTGCTTTAAATACCAAGCAAGGCGTTATTGACCT TGAGCTTCCAGCTGATCATTATATAGATGATGACAACACATCAGATGATAAGCCTATAGA TTTCCTTGGAGTAGATTCGGGTACAAAACTGCCGAATGATGCCGGGGTCACATTCAGTGG CGCAGAAGGCTTGGGGAGGTTCAGTGATAATAGCTCAACCTCTGGTTTGCTGGCTACTAA TAAACCGGGAGGCTGCCATGTCGCTGACCTGAATGAGCCAATTACTGGGATGCATATGGG TGGAACAAACGGGTCAGTACCCAGAGGTCTTCCGTATACCTTGGAGAACTCTTGGCGCCA ATCTGCAGTGAGATCAGGCACAGCTAACTTTGGTTTCAATAAAGAATACTCCAAAGAGAA GCATACCGATGAAGGAACGAGCTCAAATTTCCTCGATGCAAGTGCCAAACTAAGACAGGA GGAGAAACCATTGATTGATAAAGGAAAACAAGTCAGCAGTCAATCTTTTTTTACACCCAG ATACAGCAATACTGATCTGCAAAAATCCTTCAAGGTTGCTGATGGGAGATCTGCAACCAA TGAGTTTATTTACCATGGTCAAAATAGTTCAGTTGGATGGTTTTCAAAAGGTCCTATGGG AGCATCTGCCGTCAATAATTTTGCTAGACTTGACCATCCACATCATTCAAGTATTGGTAC ACTTGTTGCTCCAATCTCCATTCCTCACATAGACCATCCTTCCGTCGCCTCTCCTATAGG TTCTTGCACAGTGGACCCAAGGAGCAGTGTTATCAACAATGCTTTCCAGCGAGTTCCAAG TTTCAATGGATCCTCAACTGTTAATTCATACAAGAGTCCTGGTGCTGTGACCCAAAGCAT TGGACCTTCGAGTCACAGCATTGGACCTTCGATTCATAAGCTTAAAAGATTCGATAATTT GGATGGTAGTTACTTTGGCTTTCCGCTTGATCCATTTTCCGCATCACGATCCAGACAACA GGTTGCAATGTCAAGTGAGTTGGAGCAAAGGAACTGCCTGATGTTTGAACATTCAGCTGC ACGGCAGTCTCTTGGGTATACTCAGCCCACAAGCACCAAGGGCACAAAGAACTTTAATCT GAATGAAGCACTGTCAGATGGTCCAGAAGAGCTTGTAGAACAGGATGGAAGATCTGTTGG CAGTTTGCAGCATAGTAAAGGTGAGGGATCAGTATTTGGGATCTCTTGGCTAAAAAATAG AGCTACTTGTGCTGATCCAACAGGTTTGGAAAAGCAAAGGAAGGTGTTTGGCCATTCCAA TGGGACTGCAACAGACACGAAAAACAACAACGACTTGACGGGAACAACACCGATTGTTTG CAATTTGTCAGATTCCGCCTCGACGTCCCTAGGTTGCAGAATTAAGATAGATGATGCTTC TGATGTCATCACTGATAGAACTTGGCTGGTATGTAATAAGACTGAGGAGAGTACCACGAG ACATTTACCACTTTCATGCCAGAAACCCTTTGACAGAGATGAACAAACTGCTGAAGGTGT TGTCAAGAAAAGTGGCGCCGTCATCAGAAATTTATTTGATCTGAATGATGACATACCACA TGAAGATAACTCAGAGTCATCAGTAGTGTCACATGAATGCGACGTGGCGTCGTTACAGAA CAACCATGCTAAGCGCACATTTTTGATTGACTTGGAAGAAATGCCAGCTTGTGAAGATGG TGCTGCCTGGACTTCTCAACAGGAATGCACACCTTCTGGTACGCTTGATGCATGCAAGGA AGCTGATATGTGTTCTCCATCCGCTATGGATGCAGCGCAGATCATTCTTGCGTTGTCAAC GGATGTGCTGACCACCACAGGCACACCCGATGATATGCTGCAGTGGTTTGCTGAGCTCGC GATATCAAGCACGGATGCCCATGCCGATGAGCAAGCAGAAGCCCAGGGTTGCATCAATAA TTTCAGTGATGATGGTTTGGATTCATTTGAAGCCTTGACACTGAAGCTGGAAGAGTGCAA TACTGATGAGCGTTGGACACCGGAACCACCACTGACAGACGATGAACAAGCTGTTTCAGC GGTGAACCTGCTGTCCAAGCCAAAAAGAGGACCGCAAAGGAAGCGACGGCAGAAGCGAGA CTTCCAGAAGGACATCTTACCTGGTCTCTCGTCACTTTCCCGTCCTAAAATCATAGAGGA CATTCAGCTAATTGAGGGGTTAGTACAGGCATCTGGTGGATCATGGGAGTCGAGTTTCAC TAGGCGAGCGCGCTGTGGGCGAACAAGAGGTAGAAAGCCCCGCAAAAACCAGCCAGCTAC CGTAGAGATAGAAGCTGAGGCCGAGGCCGAGGTGAGCCCGCCCTTGAAACCCGACTCCAT TGGCTTAGAAGCTGATGAAAGGGGCATGGTTAGCTGGGGACGAACAACAAGACGGTGTCG CAAGCCGAGATGCCCCTCGGGCAGTAACATCGCGGCTTCGTCTTGAGCGACTGATCTTGG TCAGAGAGAACGTCGGTCACGATCATGTACTTGGGTTCGGGTTCCAGATTTGCCATCGAG ATTGCGGTGGACTGGTATAAAGGTAAAAAATCACAGCCATGAGTGTGCATACTCTGCTGG CCTGTTTGGCCGGCCTCCCCCCTGCAGAGATTTCATGCCTTTTCGGGTCGAAACATGGTG TACATTTTTTTCTATAATAAATTCTTAAACTAGTCTATATGTGACAATTTCTGTAACAGC GTTGTATTAAGCTGGGCTCCAGGGCCTGAGGGGCCTGCTGTAATTCTTGAGATAGTGGCG AGGTACCTTGACTGTCCGGTATTCAGAAATCAAAAAGGCTAATCGGTGTAGTTCTATATA GTTC
Protein Sequence (1017 aa)
>BART1_0-u39181.013 1017 150831_barley_pseudomolecules MIATCPLFCSASFDWSVQQTVTLMGAKVEAESYNTGYYATGDLHMDSNGWRSPYYEDKPS NGQLYNGFMTKQADGYSEYDNETLKRTMLSHEAMFRQQVYELHRVYKIQRDLMKHYESKD TYAYPVLADASQTNSSSQVPPNGSKMIWQMPLGAKTYGEATVAVHTDTNHSLKFLSDGSV LPSPDGFPSNGVALNTKQGVIDLELPADHYIDDDNTSDDKPIDFLGVDSGTKLPNDAGVT FSGAEGLGRFSDNSSTSGLLATNKPGGCHVADLNEPITGMHMGGTNGSVPRGLPYTLENS WRQSAVRSGTANFGFNKEYSKEKHTDEGTSSNFLDASAKLRQEEKPLIDKGKQVSSQSFF TPRYSNTDLQKSFKVADGRSATNEFIYHGQNSSVGWFSKGPMGASAVNNFARLDHPHHSS IGTLVAPISIPHIDHPSVASPIGSCTVDPRSSVINNAFQRVPSFNGSSTVNSYKSPGAVT QSIGPSSHSIGPSIHKLKRFDNLDGSYFGFPLDPFSASRSRQQVAMSSELEQRNCLMFEH SAARQSLGYTQPTSTKGTKNFNLNEALSDGPEELVEQDGRSVGSLQHSKGEGSVFGISWL KNRATCADPTGLEKQRKVFGHSNGTATDTKNNNDLTGTTPIVCNLSDSASTSLGCRIKID DASDVITDRTWLVCNKTEESTTRHLPLSCQKPFDRDEQTAEGVVKKSGAVIRNLFDLNDD IPHEDNSESSVVSHECDVASLQNNHAKRTFLIDLEEMPACEDGAAWTSQQECTPSGTLDA CKEADMCSPSAMDAAQIILALSTDVLTTTGTPDDMLQWFAELAISSTDAHADEQAEAQGC INNFSDDGLDSFEALTLKLEECNTDERWTPEPPLTDDEQAVSAVNLLSKPKRGPQRKRRQ KRDFQKDILPGLSSLSRPKIIEDIQLIEGLVQASGGSWESSFTRRARCGRTRGRKPRKNQ PATVEIEAEAEAEVSPPLKPDSIGLEADERGMVSWGRTTRRCRKPRCPSGSNIAASS