- Transcript BART1_0-u39181.006
- Transcript IDBART1_0-u39181.006
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220256 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224322 | 602224150 | - |
| chr5H | 4 | 602224952 | 602224892 | - |
| chr5H | 5 | 602225112 | 602225079 | - |
| chr5H | 6 | 602226910 | 602226266 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 2.66547 | 1.39958 |
| morex | ETI | 0.888749 | 0 | 0.667182 |
| morex | LEA | 2.50257 | 1.25665 | 0 |
| morex | EPI | 0.307849 | 0.839452 | 0.138625 |
| morex | ROO | 0.548392 | 1.74106 | 0.00000547797 |
| morex | ROO2 | 0.0000402973 | 0.369749 | 0 |
| morex | NOD | 4.5956 | 0.0185135 | 0.216284 |
| morex | RAC | 0.448316 | 0.806977 | 0.440868 |
| morex | INF1 | 0 | 0.610089 | 0.486282 |
| morex | INF2 | 1.45498 | 3.03143 | 0.910066 |
| morex | CAR5 | 1.46312 | 1.34033 | 0.0477895 |
| morex | CAR15 | 0.237438 | 0 | 0.564824 |
| morex | LEM | 0.0000000157272 | 0.481584 | 1.37585 |
| morex | LOD | 3.41053 | 1.05016 | 0.736292 |
| morex | PAL | 1.10299 | 1.0719 | 0 |
| morex | SEN | 0 | 0.249814 | 0.380629 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +2 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +2 | 0.0 | 1388 | 765/987 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4161 bp)
>BART1_0-u39181.006 4161 150831_barley_pseudomolecules AGGATCAGCATCAGGGGGGCGGAGAGAGAGAGAGAGAATATCAGATGTCAACAAATCTGC TGTCCTTGCGGCTCGTTTAGAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCCC TTCCACCAGAGGAGAGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCAA TCCAAAACCCCCAAAAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAGA GAGAGAACAAACCGAGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTTC GTTCGTTCGTTCCGGCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCCT GGCCCCAGCAAATCCGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTATCCTCC GCCCCGATCGCCCCCCTGCCGCCGCGAGAAAGATTTGTTTTTTGTTTTGTTCTACGAGTA CTAGGATAGTATAGATACATAAATATCCTGTCTTGGTTGGGTGGTGCGGGGTTTCTCGGG GCATGGCCGCGGCGGCGGTGCCGGACAGGATGCTCGCTCGCCGAATGCTGCGGGTCGTCA GGCTCAACCCGCTGCAGCGCACTGCCAACAATCCTTCTCCCTGAGGTTATTTCTCTTGAA GTGCCATTCAGATTGGGAGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAGCATGATT GCTACATGCCCATTGTTTTGGGGATCTGCACATGGACTCAAATGGTTGGCGCTCTCCATA CTATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCATGACAAAGCAGGCAGA TGGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCTTTCACATGAAGCTAT GTTTAGACAGCAGGTTTATGAACTGCACCGTGTTTACAAAATACAGAGAGACCTGATGAA GCATTATGAAAGCAAAGACACATATGCATACCCAGTACTGGCAGATGCATCACAGACAAA TTCATCATCACAAGTTCCACCAAATGGCTCAAAGATGATATGGCAGATGCCTCTAGGGGC CAAAACATACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAACCACTCCTTGAAGTT CCTTAGTGATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTGTTGCTTT AAATACCAAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCATTATATAGATGATGA CAACACATCAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTCGGGTACAAAACTGCC GAATGATGCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTGATAATAG CTCAACCTCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCATGTCGCTGACCTGAA TGAGCCAATTACTGGGATGCATATGGGTGGAACAAACGGGTCAGTACCCAGAGGTCTTCC GTATACCTTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTAACTTTGG TTTCAATAAAGAATACTCCAAAGAGAAGCATACCGATGAAGGAACGAGCTCAAATTTCCT CGATGCAAGTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGATAAAGGAAAACAAGT CAGCAGTCAATCTTTTTTTACACCCAGATACAGCAATACTGATCTGCAAAAATCCTTCAA GGTTGCTGATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAAAATAGTTCAGT TGGATGGTTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTTGCTAGACTTGA CCATCCACATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATTCCTCACATAGA CCATCCTTCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCAGTGTTAT CAACAATGCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTTAATTCATACAA GAGTCCTGGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATTGGACCTTCGAT TCATAAGCTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTTCCGCTTGATCC ATTTTCCGCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGCAAAGGAA CTGCCTGATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGCCCACAAG CACCAAGGGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGTCCAGAAGAGCT TGTAGAACAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGGGATCAGT ATTTGGGATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACAGGTTTGGAAAA GCAAAGGAAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAAAACAACAACGA CTTGACGGGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCGACGTCCCTAGG TTGCAGAATTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACTTGGCTGGTATG TAATAAGACTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAGAAACCCTTTGA CAGAGATGAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCAGAAATTT ATTTGATCTGAATGATGACATACCACATGAAGATAACTCAGAGTCATCAGTAGTGTCACA TGAATGCGACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTTTTGATTGACTT GGAAGAAATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAGGAATGCACACC TTCTGGTACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTATGGATGC AGCGCAGATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGCACACCCGATGA TATGCTGCAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCATGCCGATGAGCA AGCAGAAGCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGATTCATTTGAAGC CTTGACACTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCGGAACCACCACT GACAGACGATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAAGAGGACC GCAAAGGAAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCTGGTCTCTCGTC ACTTTCCCGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTAGTACAGGCATC TGGTGGATCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAAGAGGTAG AAAGCCCCGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGGCCGAGGT GAGCCCGCCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCATGGTTAG CTGGGGACGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTAACATCGC GGCTTCGTCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTCACGATCATGTACTTG GGTTCGGGTTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTATAAAGGTAAAAAATCA CAGCCATGAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCAGAGATTT CATGCCTTTTCGGGTCGAAACATGGTGTACATTTTTTTCTATAATAAATTCTTAAACTAG TCTATATGTGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCCTGAGGGG CCTGCTGTAATTCTTGAGATAGTGGCGAGGTACCTTGACTGTCCGGTATTCAGAAATCAA AAAGGCTAATCGGTGTAGTTCTATATAGTTCTTTTAAATCTTGTTTTGTTTTGTGTTGTG CAAGTTGCTGCTTCATTTGGTTGCAATCTTTGCTTCGCAGCCTGTACAAGTTGGAACGCC GATTCGTGTGGTATACCACCG
Protein Sequence (973 aa)
>BART1_0-u39181.006 973 150831_barley_pseudomolecules MDSNGWRSPYYEDKPSNGQLYNGFMTKQADGYSEYDNETLKRTMLSHEAMFRQQVYELHR VYKIQRDLMKHYESKDTYAYPVLADASQTNSSSQVPPNGSKMIWQMPLGAKTYGEATVAV HTDTNHSLKFLSDGSVLPSPDGFPSNGVALNTKQGVIDLELPADHYIDDDNTSDDKPIDF LGVDSGTKLPNDAGVTFSGAEGLGRFSDNSSTSGLLATNKPGGCHVADLNEPITGMHMGG TNGSVPRGLPYTLENSWRQSAVRSGTANFGFNKEYSKEKHTDEGTSSNFLDASAKLRQEE KPLIDKGKQVSSQSFFTPRYSNTDLQKSFKVADGRSATNEFIYHGQNSSVGWFSKGPMGA SAVNNFARLDHPHHSSIGTLVAPISIPHIDHPSVASPIGSCTVDPRSSVINNAFQRVPSF NGSSTVNSYKSPGAVTQSIGPSSHSIGPSIHKLKRFDNLDGSYFGFPLDPFSASRSRQQV AMSSELEQRNCLMFEHSAARQSLGYTQPTSTKGTKNFNLNEALSDGPEELVEQDGRSVGS LQHSKGEGSVFGISWLKNRATCADPTGLEKQRKVFGHSNGTATDTKNNNDLTGTTPIVCN LSDSASTSLGCRIKIDDASDVITDRTWLVCNKTEESTTRHLPLSCQKPFDRDEQTAEGVV KKSGAVIRNLFDLNDDIPHEDNSESSVVSHECDVASLQNNHAKRTFLIDLEEMPACEDGA AWTSQQECTPSGTLDACKEADMCSPSAMDAAQIILALSTDVLTTTGTPDDMLQWFAELAI SSTDAHADEQAEAQGCINNFSDDGLDSFEALTLKLEECNTDERWTPEPPLTDDEQAVSAV NLLSKPKRGPQRKRRQKRDFQKDILPGLSSLSRPKIIEDIQLIEGLVQASGGSWESSFTR RARCGRTRGRKPRKNQPATVEIEAEAEAEVSPPLKPDSIGLEADERGMVSWGRTTRRCRK PRCPSGSNIAASS