- Transcript BART1_0-u39181.008
- Transcript IDBART1_0-u39181.008
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220276 | - |
| chr5H | 2 | 602223971 | 602223248 | - |
| chr5H | 3 | 602224386 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602226795 | 602226266 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.94273 | 9.30498 | 10.1897 |
| morex | ETI | 3.51215 | 4.74019 | 5.89739 |
| morex | LEA | 4.53082 | 5.8254 | 4.01256 |
| morex | EPI | 4.78501 | 5.09424 | 5.30073 |
| morex | ROO | 3.02654 | 6.53539 | 2.85776 |
| morex | ROO2 | 4.94504 | 5.02308 | 4.59323 |
| morex | NOD | 7.42558 | 5.86895 | 6.38083 |
| morex | RAC | 9.48992 | 8.82003 | 9.9108 |
| morex | INF1 | 20.4506 | 18.9305 | 17.1412 |
| morex | INF2 | 21.0197 | 18.3285 | 14.9551 |
| morex | CAR5 | 12.0183 | 6.39245 | 10.2524 |
| morex | CAR15 | 2.51023 | 3.445 | 3.34803 |
| morex | LEM | 7.2936 | 9.32041 | 10.0785 |
| morex | LOD | 21.9912 | 16.5395 | 21.0788 |
| morex | PAL | 10.7021 | 12.7572 | 12.716 |
| morex | SEN | 3.1421 | 5.40117 | 2.86758 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +2 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +2 | 0.0 | 1392 | 773/1010 (77%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4183 bp)
>BART1_0-u39181.008 4183 150831_barley_pseudomolecules TTCCCTTCCACCAGAGGAGAGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAAC GCCAATCCAAAACCCCCAAAAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTG TGAGAGAGAGAACAAACCGAGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTT CGTTCGTTCGTTCGTTCCGGCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCT GGCCTGGCCCCAGCAAATCCGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTAT CCTCCGCCCCGATCGCCCCCCTGCCGCCGCGAGAAAGATTTGTTTTTTGTTTTGTTCTAC GAGTACTAGGATAGTATAGATACATAAATATCCTGTCTTGGTTGGGTGGTGCGGGGTTTC TCGGGGCATGGCCGCGGCGGCGGTGCCGGACAGGATGCTCGCTCGCCGAATGCTGCGGGT CGTCAGGCTCAACCCGCTGCAGCGCACTGCCAACAATCCTTCTCCCTGAGGTTATTTCTC TTGAAGTGCCATTCAGATTGGGAGGTAGTATTGATTCAGCTGAGCAAGTCGAGCTGTCTA GTTAGCTCAAAGCATTGAAGATTGGAATTTTACACGTGCATTGCATTAACACTGTGATTT CCCTTTGGTGCCCTGTGATGTGATGATCAGTTCTAGTTGCCGTCCGGGTCAAGGCGAATT TTAGCATGATTGCTACATGCCCATTGTTTTGACTGTAACACTAATGGGAGCTAAAGTGGA AGCTGAGAGTTACAATACTGGATATTATGCCACAGGGGATCTGCACATGGACTCAAATGG TTGGCGCTCTCCATACTATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCAT GACAAAGCAGGCAGATGGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCT TTCACATGAAGCTATGTTTAGACAGCAGAGAGACCTGATGAAGCATTATGAAAGCAAAGA CACATATGCATACCCAGTACTGGCAGATGCATCACAGACAAATTCATCATCACAAGTTCC ACCAAATGGCTCAAAGATGATATGGCAGATGCCTCTAGGGGCCAAAACATACGGAGAAGC TACTGTTGCAGTGCACACTGATACAAACCACTCCTTGAAGTTCCTTAGTGATGGCAGTGT TCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTGTTGCTTTAAATACCAAGCAAGGCGT TATTGACCTTGAGCTTCCAGCTGATCATTATATAGATGATGACAACACATCAGATGATAA GCCTATAGATTTCCTTGGAGTAGATTCGGGTACAAAACTGCCGAATGATGCCGGGGTCAC ATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTGATAATAGCTCAACCTCTGGTTTGCT GGCTACTAATAAACCGGGAGGCTGCCATGTCGCTGACCTGAATGAGCCAATTACTGGGAT GCATATGGGTGGAACAAACGGGTCAGTACCCAGAGGTCTTCCGTATACCTTGGAGAACTC TTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTAACTTTGGTTTCAATAAAGAATACTC CAAAGAGAAGCATACCGATGAAGGAACGAGCTCAAATTTCCTCGATGCAAGTGCCAAACT AAGACAGGAGGAGAAACCATTGATTGATAAAGGAAAACAAGTCAGCAGTCAATCTTTTTT TACACCCAGATACAGCAATACTGATCTGCAAAAATCCTTCAAGGTTGCTGATGGGAGATC TGCAACCAATGAGTTTATTTACCATGGTCAAAATAGTTCAGTTGGATGGTTTTCAAAAGG TCCTATGGGAGCATCTGCCGTCAATAATTTTGCTAGACTTGACCATCCACATCATTCAAG TATTGGTACACTTGTTGCTCCAATCTCCATTCCTCACATAGACCATCCTTCCGTCGCCTC TCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCAGTGTTATCAACAATGCTTTCCAGCG AGTTCCAAGTTTCAATGGATCCTCAACTGTTAATTCATACAAGAGTCCTGGTGCTGTGAC CCAAAGCATTGGACCTTCGAGTCACAGCATTGGACCTTCGATTCATAAGCTTAAAAGATT CGATAATTTGGATGGTAGTTACTTTGGCTTTCCGCTTGATCCATTTTCCGCATCACGATC CAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGCAAAGGAACTGCCTGATGTTTGAACA TTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGCCCACAAGCACCAAGGGCACAAAGAA CTTTAATCTGAATGAAGCACTGTCAGATGGTCCAGAAGAGCTTGTAGAACAGGATGGAAG ATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGGGATCAGTATTTGGGATCTCTTGGCT AAAAAATAGAGCTACTTGTGCTGATCCAACAGGTTTGGAAAAGCAAAGGAAGGTGTTTGG CCATTCCAATGGGACTGCAACAGACACGAAAAACAACAACGACTTGACGGGAACAACACC GATTGTTTGCAATTTGTCAGATTCCGCCTCGACGTCCCTAGGTTGCAGAATTAAGATAGA TGATGCTTCTGATGTCATCACTGATAGAACTTGGCTGGTATGTAATAAGACTGAGGAGAG TACCACGAGACATTTACCACTTTCATGCCAGAAACCCTTTGACAGAGATGAACAAACTGC TGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCAGAAATTTATTTGATCTGAATGATGA CATACCACATGAAGATAACTCAGAGTCATCAGTAGTGTCACATGAATGCGACGTGGCGTC GTTACAGAACAACCATGCTAAGCGCACATTTTTGATTGACTTGGAAGAAATGCCAGCTTG TGAAGATGGTGCTGCCTGGACTTCTCAACAGGAATGCACACCTTCTGGTACGCTTGATGC ATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTATGGATGCAGCGCAGATCATTCTTGC GTTGTCAACGGATGTGCTGACCACCACAGGCACACCCGATGATATGCTGCAGTGGTTTGC TGAGCTCGCGATATCAAGCACGGATGCCCATGCCGATGAGCAAGCAGAAGCCCAGGGTTG CATCAATAATTTCAGTGATGATGGTTTGGATTCATTTGAAGCCTTGACACTGAAGCTGGA AGAGTGCAATACTGATGAGCGTTGGACACCGGAACCACCACTGACAGACGATGAACAAGC TGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAAGAGGACCGCAAAGGAAGCGACGGCA GAAGCGAGACTTCCAGAAGGACATCTTACCTGGTCTCTCGTCACTTTCCCGTCCTAAAAT CATAGAGGACATTCAGCTAATTGAGGGGTTAGTACAGGCATCTGGTGGATCATGGGAGTC GAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAAGAGGTAGAAAGCCCCGCAAAAACCA GCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGGCCGAGGTGAGCCCGCCCTTGAAACC CGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCATGGTTAGCTGGGGACGAACAACAAG ACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTAACATCGCGGCTTCGTCTTGAGCGAC TGATCTTGGTCAGAGAGAACGTCGGTCACGATCATGTACTTGGGTTCGGGTTCCAGATTT GCCATCGAGATTGCGGTGGACTGGTATAAAGGTAAAAAATCACAGCCATGAGTGTGCATA CTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCAGAGATTTCATGCCTTTTCGGGTCGA AACATGGTGTACATTTTTTTCTATAATAAATTCTTAAACTAGTCTATATGTGACAATTTC TGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCCTGAGGGGCCTGCTGTAATTCTTGAG ATAGTGGCGAGGTACCTTGACTGTCCGGTATTCAGAAATCAAAAAGGCTAATCGGTGTAG TTCTATATAGTTCTTTTAAATCTTGTTTTGTTTTGTGTTGTGCAAGTTGCTGCTTCATTT GGTTGCAATCTTTGCTTCGCAGCCTGTACAAGTTGGAACGCCG
Protein Sequence (992 aa)
>BART1_0-u39181.008 992 150831_barley_pseudomolecules MPIVLTVTLMGAKVEAESYNTGYYATGDLHMDSNGWRSPYYEDKPSNGQLYNGFMTKQAD GYSEYDNETLKRTMLSHEAMFRQQRDLMKHYESKDTYAYPVLADASQTNSSSQVPPNGSK MIWQMPLGAKTYGEATVAVHTDTNHSLKFLSDGSVLPSPDGFPSNGVALNTKQGVIDLEL PADHYIDDDNTSDDKPIDFLGVDSGTKLPNDAGVTFSGAEGLGRFSDNSSTSGLLATNKP GGCHVADLNEPITGMHMGGTNGSVPRGLPYTLENSWRQSAVRSGTANFGFNKEYSKEKHT DEGTSSNFLDASAKLRQEEKPLIDKGKQVSSQSFFTPRYSNTDLQKSFKVADGRSATNEF IYHGQNSSVGWFSKGPMGASAVNNFARLDHPHHSSIGTLVAPISIPHIDHPSVASPIGSC TVDPRSSVINNAFQRVPSFNGSSTVNSYKSPGAVTQSIGPSSHSIGPSIHKLKRFDNLDG SYFGFPLDPFSASRSRQQVAMSSELEQRNCLMFEHSAARQSLGYTQPTSTKGTKNFNLNE ALSDGPEELVEQDGRSVGSLQHSKGEGSVFGISWLKNRATCADPTGLEKQRKVFGHSNGT ATDTKNNNDLTGTTPIVCNLSDSASTSLGCRIKIDDASDVITDRTWLVCNKTEESTTRHL PLSCQKPFDRDEQTAEGVVKKSGAVIRNLFDLNDDIPHEDNSESSVVSHECDVASLQNNH AKRTFLIDLEEMPACEDGAAWTSQQECTPSGTLDACKEADMCSPSAMDAAQIILALSTDV LTTTGTPDDMLQWFAELAISSTDAHADEQAEAQGCINNFSDDGLDSFEALTLKLEECNTD ERWTPEPPLTDDEQAVSAVNLLSKPKRGPQRKRRQKRDFQKDILPGLSSLSRPKIIEDIQ LIEGLVQASGGSWESSFTRRARCGRTRGRKPRKNQPATVEIEAEAEAEVSPPLKPDSIGL EADERGMVSWGRTTRRCRKPRCPSGSNIAASS