- Transcript BART1_0-u39181.003
- Transcript IDBART1_0-u39181.003
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220146 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224386 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602226906 | 602225750 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0903218 | 0.625415 | 0.212357 |
| morex | ETI | 0 | 0 | 0.0000434534 |
| morex | LEA | 1.05736 | 1.06618 | 0.00103422 |
| morex | EPI | 0.00000201596 | 0 | 0.357324 |
| morex | ROO | 0 | 1.21827 | 0 |
| morex | ROO2 | 0.0000874296 | 0.000364835 | 0 |
| morex | NOD | 1.36267 | 0 | 0 |
| morex | RAC | 0.0000000644172 | 0.0544941 | 0.0165285 |
| morex | INF1 | 1.68853 | 0.954004 | 0 |
| morex | INF2 | 1.79889 | 2.80686 | 0.965042 |
| morex | CAR5 | 2.98941 | 3.1767 | 2.79076 |
| morex | CAR15 | 0.519437 | 0.525271 | 0.0240751 |
| morex | LEM | 0 | 0.707475 | 0 |
| morex | LOD | 0.000000000137631 | 0.524895 | 0.000000000615451 |
| morex | PAL | 0.703368 | 0 | 0.000000100118 |
| morex | SEN | 0.463529 | 0.0000002143 | 0.721729 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +2 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +2 | 0.0 | 1424 | 784/1010 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4973 bp)
>BART1_0-u39181.003 4973 150831_barley_pseudomolecules TCAGCATCAGGGGGGCGGAGAGAGAGAGAGAGAATATCAGATGTCAACAAATCTGCTGTC CTTGCGGCTCGTTTAGAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCCCTTCC ACCAGAGGAGAGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCAATCCA AAACCCCCAAAAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAGAGAGA GAACAAACCGAGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTTCGTTC GTTCGTTCCGGCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCCTGGCC CCAGCAAATCCGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTATCCTCCGCCC CGATCGCCCCCCTGCCGCCGCGAGAAAGATTTGTTTTTTGTTTTGTTCTACGAGTACTAG GATAGTATAGATACATAAATATCCTGTCTTGGTTGGGTGGTGCGGGGTTTCTCGGGGCAT GGCCGCGGCGGCGGTGCCGGACAGGATGCTCGCTCGCCGAATGCTGCGGGTCGTCAGGCT CAACCCGCTGCAGCGCACTGCCAACAATCCTTCTCCCTGAGGTGAGAATTTCCTTCCTTT CTAGCTAAATAGTTTCATTAATTCTGCCCGCGCCCTGCCTGGATCGTGGAATCGAGCTAG CAATCTCGCGGAGCGGTGCCGATTGGCTTTCCCGATGTGTTGGAGCCCCAATCCGGGGGC ACCTGGGGGGATTGGAGCTCCGATTTCGGACGAATTCGCTCTGTCCCACGTCCCTGTCGC TGTCGCCGTCACTGTTCCTTCGTCCGTTCCTGGCCACCGCCCGACGACCAGATCCGGCCG CCCTCCACGCGGCGCGTCGGCTTCGGTTCATCACCGTCGCGTCCCCGCCCGTGCCGTCGA TTCCTCCTCATTGCCGCCTCCCGCCTGTTGTCTAGATCCGGACGCCTGCCGTCCGTCACC ATCCGTTCCTCGCTTTCCTCTTTGTGCTCCAGCCGTCTGGCCCGACTTTGGCGTCCAGAT CCGCTTCGCCTTCTCTTCCCACCTCCGTGCCTGTAGCTACCGTTGCTAGTTCGTCGTGCG ATTGCCTCTGCTTCCCCGTTATTTCTCTTGAAGTGCCATTCAGATTGGGAGGTAGTATTG ATTCAGCTGAGCAAGTCGAGCTGTCTAGTTAGCTCAAAGCATTGAAGATTGGAATTTTAC ACGTGCATTGCATTAACACTGTGATTTCCCTTTGGTGCCCTGTGATGTGATGATCAGTTC TAGTTGCCGTCCGGGTCAAGGCGAATTTTAGCATGATTGCTACATGCCCATTGTTTTGAC TGTAACACTAATGGGAGCTAAAGTGGAAGCTGAGAGTTACAATACTGGATATTATGCCAC AGGGGATCTGCACATGGACTCAAATGGTTGGCGCTCTCCATACTATGAGGATAAGCCATC AAATGGGCAGTTGTACAATGGCTTCATGACAAAGCAGGCAGATGGTTATTCAGAGTACGA CAACGAAACGCTGAAGCGCACAATGCTTTCACATGAAGCTATGTTTAGACAGCAGGTTTA TGAACTGCACCGTGTTTACAAAATACAGAGAGACCTGATGAAGCATTATGAAAGCAAAGA CACATATGCATACCCAGTACTGGCAGATGCATCACAGACAAATTCATCATCACAAGTTCC ACCAAATGGCTCAAAGATGATATGGCAGATGCCTCTAGGGGCCAAAACATACGGAGAAGC TACTGTTGCAGTGCACACTGATACAAACCACTCCTTGAAGTTCCTTAGTGATGGCAGTGT TCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTGTTGCTTTAAATACCAAGCAAGGCGT TATTGACCTTGAGCTTCCAGCTGATCATTATATAGATGATGACAACACATCAGATGATAA GCCTATAGATTTCCTTGGAGTAGATTCGGGTACAAAACTGCCGAATGATGCCGGGGTCAC ATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTGATAATAGCTCAACCTCTGGTTTGCT GGCTACTAATAAACCGGGAGGCTGCCATGTCGCTGACCTGAATGAGCCAATTACTGGGAT GCATATGGGTGGAACAAACGGGTCAGTACCCAGAGGTCTTCCGTATACCTTGGAGAACTC TTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTAACTTTGGTTTCAATAAAGAATACTC CAAAGAGAAGCATACCGATGAAGGAACGAGCTCAAATTTCCTCGATGCAAGTGCCAAACT AAGACAGGAGGAGAAACCATTGATTGATAAAGGAAAACAAGTCAGCAGTCAATCTTTTTT TACACCCAGATACAGCAATACTGATCTGCAAAAATCCTTCAAGGTTGCTGATGGGAGATC TGCAACCAATGAGTTTATTTACCATGGTCAAAATAGTTCAGTTGGATGGTTTTCAAAAGG TCCTATGGGAGCATCTGCCGTCAATAATTTTGCTAGACTTGACCATCCACATCATTCAAG TATTGGTACACTTGTTGCTCCAATCTCCATTCCTCACATAGACCATCCTTCCGTCGCCTC TCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCAGTGTTATCAACAATGCTTTCCAGCG AGTTCCAAGTTTCAATGGATCCTCAACTGTTAATTCATACAAGAGTCCTGGTGCTGTGAC CCAAAGCATTGGACCTTCGAGTCACAGCATTGGACCTTCGATTCATAAGCTTAAAAGATT CGATAATTTGGATGGTAGTTACTTTGGCTTTCCGCTTGATCCATTTTCCGCATCACGATC CAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGCAAAGGAACTGCCTGATGTTTGAACA TTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGCCCACAAGCACCAAGGGCACAAAGAA CTTTAATCTGAATGAAGCACTGTCAGATGGTCCAGAAGAGCTTGTAGAACAGGATGGAAG ATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGGGATCAGTATTTGGGATCTCTTGGCT AAAAAATAGAGCTACTTGTGCTGATCCAACAGGTTTGGAAAAGCAAAGGAAGGTGTTTGG CCATTCCAATGGGACTGCAACAGACACGAAAAACAACAACGACTTGACGGGAACAACACC GATTGTTTGCAATTTGTCAGATTCCGCCTCGACGTCCCTAGGTTGCAGAATTAAGATAGA TGATGCTTCTGATGTCATCACTGATAGAACTTGGCTGGTATGTAATAAGACTGAGGAGAG TACCACGAGACATTTACCACTTTCATGCCAGAAACCCTTTGACAGAGATGAACAAACTGC TGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCAGAAATTTATTTGATCTGAATGATGA CATACCACATGAAGATAACTCAGAGTCATCAGTAGTGTCACATGAATGCGACGTGGCGTC GTTACAGAACAACCATGCTAAGCGCACATTTTTGATTGACTTGGAAGAAATGCCAGCTTG TGAAGATGGTGCTGCCTGGACTTCTCAACAGGAATGCACACCTTCTGGTACGCTTGATGC ATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTATGGATGCAGCGCAGATCATTCTTGC GTTGTCAACGGATGTGCTGACCACCACAGGCACACCCGATGATATGCTGCAGTGGTTTGC TGAGCTCGCGATATCAAGCACGGATGCCCATGCCGATGAGCAAGCAGAAGCCCAGGGTTG CATCAATAATTTCAGTGATGATGGTTTGGATTCATTTGAAGCCTTGACACTGAAGCTGGA AGAGTGCAATACTGATGAGCGTTGGACACCGGAACCACCACTGACAGACGATGAACAAGC TGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAAGAGGACCGCAAAGGAAGCGACGGCA GAAGCGAGACTTCCAGAAGGACATCTTACCTGGTCTCTCGTCACTTTCCCGTCCTAAAAT CATAGAGGACATTCAGCTAATTGAGGGGTTAGTACAGGCATCTGGTGGATCATGGGAGTC GAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAAGAGGTAGAAAGCCCCGCAAAAACCA GCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGGCCGAGGTGAGCCCGCCCTTGAAACC CGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCATGGTTAGCTGGGGACGAACAACAAG ACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTAACATCGCGGCTTCGTCTTGAGCGAC TGATCTTGGTCAGAGAGAACGTCGGTCACGATCATGTACTTGGGTTCGGGTTCCAGATTT GCCATCGAGATTGCGGTGGACTGGTATAAAGGTAAAAAATCACAGCCATGAGTGTGCATA CTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCAGAGATTTCATGCCTTTTCGGGTCGA AACATGGTGTACATTTTTTTCTATAATAAATTCTTAAACTAGTCTATATGTGACAATTTC TGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCCTGAGGGGCCTGCTGTAATTCTTGAG ATAGTGGCGAGGTACCTTGACTGTCCGGTATTCAGAAATCAAAAAGGCTAATCGGTGTAG TTCTATATAGTTCTTTTAAATCTTGTTTTGTTTTGTGTTGTGCAAGTTGCTGCTTCATTT GGTTGCAATCTTTGCTTCGCAGCCTGTACAAGTTGGAACGCCGATTCGTGTGGTATACCA CCGTTGAGGACTTGATCCAGACAGAACTGGTAGTTCATGGCTTATTTGCAATAGGTTTAT TTTCAACAACTTCGATAGGAGCTGAACTACTAGTACCCTTTGAGAAAGAAGAG
Protein Sequence (1003 aa)
>BART1_0-u39181.003 1003 150831_barley_pseudomolecules MPIVLTVTLMGAKVEAESYNTGYYATGDLHMDSNGWRSPYYEDKPSNGQLYNGFMTKQAD GYSEYDNETLKRTMLSHEAMFRQQVYELHRVYKIQRDLMKHYESKDTYAYPVLADASQTN SSSQVPPNGSKMIWQMPLGAKTYGEATVAVHTDTNHSLKFLSDGSVLPSPDGFPSNGVAL NTKQGVIDLELPADHYIDDDNTSDDKPIDFLGVDSGTKLPNDAGVTFSGAEGLGRFSDNS STSGLLATNKPGGCHVADLNEPITGMHMGGTNGSVPRGLPYTLENSWRQSAVRSGTANFG FNKEYSKEKHTDEGTSSNFLDASAKLRQEEKPLIDKGKQVSSQSFFTPRYSNTDLQKSFK VADGRSATNEFIYHGQNSSVGWFSKGPMGASAVNNFARLDHPHHSSIGTLVAPISIPHID HPSVASPIGSCTVDPRSSVINNAFQRVPSFNGSSTVNSYKSPGAVTQSIGPSSHSIGPSI HKLKRFDNLDGSYFGFPLDPFSASRSRQQVAMSSELEQRNCLMFEHSAARQSLGYTQPTS TKGTKNFNLNEALSDGPEELVEQDGRSVGSLQHSKGEGSVFGISWLKNRATCADPTGLEK QRKVFGHSNGTATDTKNNNDLTGTTPIVCNLSDSASTSLGCRIKIDDASDVITDRTWLVC NKTEESTTRHLPLSCQKPFDRDEQTAEGVVKKSGAVIRNLFDLNDDIPHEDNSESSVVSH ECDVASLQNNHAKRTFLIDLEEMPACEDGAAWTSQQECTPSGTLDACKEADMCSPSAMDA AQIILALSTDVLTTTGTPDDMLQWFAELAISSTDAHADEQAEAQGCINNFSDDGLDSFEA LTLKLEECNTDERWTPEPPLTDDEQAVSAVNLLSKPKRGPQRKRRQKRDFQKDILPGLSS LSRPKIIEDIQLIEGLVQASGGSWESSFTRRARCGRTRGRKPRKNQPATVEIEAEAEAEV SPPLKPDSIGLEADERGMVSWGRTTRRCRKPRCPSGSNIAASS