Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u3918192.2--7267-616Containing




Transcripts from Gene HORVU5Hr1G096780

TranscriptLength(bp)Description
HORVU5Hr1G096780.14052gene=HORVU5Hr1G096780 CDS=542-3553
HORVU5Hr1G096780.23901gene=HORVU5Hr1G096780 CDS=573-3494
HORVU5Hr1G096780.34807gene=HORVU5Hr1G096780 CDS=1479-4400
HORVU5Hr1G096780.44871gene=HORVU5Hr1G096780 CDS=1453-4464
HORVU5Hr1G096780.53752gene=HORVU5Hr1G096780 CDS=414-3425
HORVU5Hr1G096780.63012gene=HORVU5Hr1G096780 CDS=1-3012



Exon Structure of HORVU5Hr1G096780


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g55130.2 +1 0.0 566 384/669 (57%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi1g08000.3.p +1 0.0 1424 784/1010 (78%) pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons