- Gene HORVU5Hr1G096780
- Gene IDHORVU5Hr1G096780
- Location chr5H: 602220245 - 602227511
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u39181 | 92.2 | - | - | 7267 | -616 | Containing |
Transcripts from Gene HORVU5Hr1G096780
Transcript | Length(bp) | Description |
---|---|---|
HORVU5Hr1G096780.1 | 4052 | gene=HORVU5Hr1G096780 CDS=542-3553 |
HORVU5Hr1G096780.2 | 3901 | gene=HORVU5Hr1G096780 CDS=573-3494 |
HORVU5Hr1G096780.3 | 4807 | gene=HORVU5Hr1G096780 CDS=1479-4400 |
HORVU5Hr1G096780.4 | 4871 | gene=HORVU5Hr1G096780 CDS=1453-4464 |
HORVU5Hr1G096780.5 | 3752 | gene=HORVU5Hr1G096780 CDS=414-3425 |
HORVU5Hr1G096780.6 | 3012 | gene=HORVU5Hr1G096780 CDS=1-3012 |
Exon Structure of HORVU5Hr1G096780
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g55130.2 | +1 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g08000.3.p | +1 | 0.0 | 1424 | 784/1010 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons