- Transcript BART1_0-u39181.011
- Transcript IDBART1_0-u39181.011
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220334 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224417 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602227307 | 602226266 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0864821 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0.0838454 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0.0721168 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0.101592 | 0 | 0 |
| morex | INF1 | 0.119945 | 0 | 0 |
| morex | INF2 | 0.631577 | 0.00033462 | 0 |
| morex | CAR5 | 0.0000784397 | 0.0400882 | 0.212462 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0.215063 | 0 |
| morex | LOD | 0 | 0 | 0.166058 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0.193669 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +2 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +2 | 0.0 | 1421 | 781/1008 (77%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4701 bp)
>BART1_0-u39181.011 4701 150831_barley_pseudomolecules CCCTCTCCCCCCCCACCGCACCAAGGGTGGACAGATTCTCTCCCATGTCCCAATCCCTAA ACTCCCCCATTATATTACTCTAGAAACACACCAAACCGAGGAAAGAAATCAATCATCCTC GTGATAACTGTCTCGTAGGAAATCCGATCCTCCAGAATAATTGTATCATATCAGCACACT TGGGATCGGAAAGGAAGGAAAATGGAATGAACTAGGAGGACTGGTTCCACACCGGAATTG TGAGAGGGACAGCAGACGGTGGCGATGTGGTGGCAGGGCAGGGCAGGGCAGGGGAGGGGA GATAATAGTATTATAATATTGGGAAATGTCTGAGTTGAGTTGGTGATTGATGAGAGAGAA AGACGGAGGGAGAGGGACAAGGGGTGGGGTGATGGGGAGGATCAGCATCAGGGGGGCGGA GAGAGAGAGAGAGAATATCAGATGTCAACAAATCTGCTGTCCTTGCGGCTCGTTTAGAAA GAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCCCTTCCACCAGAGGAGAGAGAAAGA AAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCAATCCAAAACCCCCAAAAGGAGCAA GGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAGAGAGAGAACAAACCGAGATACTCC CACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTTCGTTCGTTCGTTCCGGCAGGAGCA AGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCCTGGCCCCAGCAAATCCGATTCCAA CCTCCGCCCGGATACATCGGAGCTCCGGGTATCCTCCGCCCCGATCGCCCCCCTGCCGCC GCGAGAAAGATTTGTTTTTTGTTTTGTTCTACGAGTACTAGGATAGTATAGATACATAAA TATCCTGTCTTGGTTGGGTGGTGCGGGGTTTCTCGGGGCATGGCCGCGGCGGCGGTGCCG GACAGGATGCTCGCTCGCCGAATGCTGCGGGTCGTCAGGCTCAACCCGCTGCAGCGCACT GCCAACAATCCTTCTCCCTGAGGTTATTTCTCTTGAAGTGCCATTCAGATTGGGAGGTAG TATTGATTCAGCTGAGCAAGTCGAGCTGTCTAGTTAGCTCAAAGCATTGAAGATTGGAAT TTTACACGTGCATTGCATTAACACTGTGATTTCCCTTTGGTGCCCTGTGATGTGATGATC AGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAGCATGATTGCTACATGCCCATTGTT TTGTTCAGCATCATTTGACTGGTCTGTTCAACAGACTGTAACACTAATGGGAGCTAAAGT GGAAGCTGAGAGTTACAATACTGGATATTATGCCACAGGGGATCTGCACATGGACTCAAA TGGTTGGCGCTCTCCATACTATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTT CATGACAAAGCAGGCAGATGGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAAT GCTTTCACATGAAGCTATGTTTAGACAGCAGGTTTATGAACTGCACCGTGTTTACAAAAT ACAGAGAGACCTGATGAAGCATTATGAAAGCAAAGACACATATGCATACCCAGTACTGGC AGATGCATCACAGACAAATTCATCATCACAAGTTCCACCAAATGGCTCAAAGATGATATG GCAGATGCCTCTAGGGGCCAAAACATACGGAGAAGCTACTGTTGCAGTGCACACTGATAC AAACCACTCCTTGAAGTTCCTTAGTGATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCC CTCAAATGGTGTTGCTTTAAATACCAAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGA TCATTATATAGATGATGACAACACATCAGATGATAAGCCTATAGATTTCCTTGGAGTAGA TTCGGGTACAAAACTGCCGAATGATGCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGG GAGGTTCAGTGATAATAGCTCAACCTCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTG CCATGTCGCTGACCTGAATGAGCCAATTACTGGGATGCATATGGGTGGAACAAACGGGTC AGTACCCAGAGGTCTTCCGTATACCTTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATC AGGCACAGCTAACTTTGGTTTCAATAAAGAATACTCCAAAGAGAAGCATACCGATGAAGG AACGAGCTCAAATTTCCTCGATGCAAGTGCCAAACTAAGACAGGAGGAGAAACCATTGAT TGATAAAGGAAAACAAGTCAGCAGTCAATCTTTTTTTACACCCAGATACAGCAATACTGA TCTGCAAAAATCCTTCAAGGTTGCTGATGGGAGATCTGCAACCAATGAGTTTATTTACCA TGGTCAAAATAGTTCAGTTGGATGGTTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAA TAATTTTGCTAGACTTGACCATCCACATCATTCAAGTATTGGTACACTTGTTGCTCCAAT CTCCATTCCTCACATAGACCATCCTTCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGA CCCAAGGAGCAGTGTTATCAACAATGCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTC AACTGTTAATTCATACAAGAGTCCTGGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCA CAGCATTGGACCTTCGATTCATAAGCTTAAAAGATTCGATAATTTGGATGGTAGTTACTT TGGCTTTCCGCTTGATCCATTTTCCGCATCACGATCCAGACAACAGGTTGCAATGTCAAG TGAGTTGGAGCAAAGGAACTGCCTGATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGG GTATACTCAGCCCACAAGCACCAAGGGCACAAAGAACTTTAATCTGAATGAAGCACTGTC AGATGGTCCAGAAGAGCTTGTAGAACAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAG TAAAGGTGAGGGATCAGTATTTGGGATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGA TCCAACAGGTTTGGAAAAGCAAAGGAAGGTGTTTGGCCATTCCAATGGGACTGCAACAGA CACGAAAAACAACAACGACTTGACGGGAACAACACCGATTGTTTGCAATTTGTCAGATTC CGCCTCGACGTCCCTAGGTTGCAGAATTAAGATAGATGATGCTTCTGATGTCATCACTGA TAGAACTTGGCTGGTATGTAATAAGACTGAGGAGAGTACCACGAGACATTTACCACTTTC ATGCCAGAAACCCTTTGACAGAGATGAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGG CGCCGTCATCAGAAATTTATTTGATCTGAATGATGACATACCACATGAAGATAACTCAGA GTCATCAGTAGTGTCACATGAATGCGACGTGGCGTCGTTACAGAACAACCATGCTAAGCG CACATTTTTGATTGACTTGGAAGAAATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTC TCAACAGGAATGCACACCTTCTGGTACGCTTGATGCATGCAAGGAAGCTGATATGTGTTC TCCATCCGCTATGGATGCAGCGCAGATCATTCTTGCGTTGTCAACGGATGTGCTGACCAC CACAGGCACACCCGATGATATGCTGCAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGA TGCCCATGCCGATGAGCAAGCAGAAGCCCAGGGTTGCATCAATAATTTCAGTGATGATGG TTTGGATTCATTTGAAGCCTTGACACTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTG GACACCGGAACCACCACTGACAGACGATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTC CAAGCCAAAAAGAGGACCGCAAAGGAAGCGACGGCAGAAGCGAGACTTCCAGAAGGACAT CTTACCTGGTCTCTCGTCACTTTCCCGTCCTAAAATCATAGAGGACATTCAGCTAATTGA GGGGTTAGTACAGGCATCTGGTGGATCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTG TGGGCGAACAAGAGGTAGAAAGCCCCGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGC TGAGGCCGAGGCCGAGGTGAGCCCGCCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGA TGAAAGGGGCATGGTTAGCTGGGGACGAACAACAAGACGGTGTCGCAAGCCGAGATGCCC CTCGGGCAGTAACATCGCGGCTTCGTCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCG GTCACGATCATGTACTTGGGTTCGGGTTCCAGATTTGCCATCGAGATTGCGGTGGACTGG TATAAAGGTAAAAAATCACAGCCATGAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCC TCCCCCCTGCAGAGATTTCATGCCTTTTCGGGTCGAAACATGGTGTACATTTTTTTCTAT AATAAATTCTTAAACTAGTCTATATGTGACAATTTCTGTAACAGCGTTGTATTAAGCTGG GCTCCAGGGCCTGAGGGGCCTGCTGTAATTCTTGAGATAGTGGCGAGGTACCTTGACTGT CCGGTATTCAGAAATCAAAAAGGCTAATCGGTGTAGTTCTATATAGTTCTTTTAAATCTT GTTTTGTTTTGTGTTGTGCAA
Protein Sequence (1017 aa)
>BART1_0-u39181.011 1017 150831_barley_pseudomolecules MIATCPLFCSASFDWSVQQTVTLMGAKVEAESYNTGYYATGDLHMDSNGWRSPYYEDKPS NGQLYNGFMTKQADGYSEYDNETLKRTMLSHEAMFRQQVYELHRVYKIQRDLMKHYESKD TYAYPVLADASQTNSSSQVPPNGSKMIWQMPLGAKTYGEATVAVHTDTNHSLKFLSDGSV LPSPDGFPSNGVALNTKQGVIDLELPADHYIDDDNTSDDKPIDFLGVDSGTKLPNDAGVT FSGAEGLGRFSDNSSTSGLLATNKPGGCHVADLNEPITGMHMGGTNGSVPRGLPYTLENS WRQSAVRSGTANFGFNKEYSKEKHTDEGTSSNFLDASAKLRQEEKPLIDKGKQVSSQSFF TPRYSNTDLQKSFKVADGRSATNEFIYHGQNSSVGWFSKGPMGASAVNNFARLDHPHHSS IGTLVAPISIPHIDHPSVASPIGSCTVDPRSSVINNAFQRVPSFNGSSTVNSYKSPGAVT QSIGPSSHSIGPSIHKLKRFDNLDGSYFGFPLDPFSASRSRQQVAMSSELEQRNCLMFEH SAARQSLGYTQPTSTKGTKNFNLNEALSDGPEELVEQDGRSVGSLQHSKGEGSVFGISWL KNRATCADPTGLEKQRKVFGHSNGTATDTKNNNDLTGTTPIVCNLSDSASTSLGCRIKID DASDVITDRTWLVCNKTEESTTRHLPLSCQKPFDRDEQTAEGVVKKSGAVIRNLFDLNDD IPHEDNSESSVVSHECDVASLQNNHAKRTFLIDLEEMPACEDGAAWTSQQECTPSGTLDA CKEADMCSPSAMDAAQIILALSTDVLTTTGTPDDMLQWFAELAISSTDAHADEQAEAQGC INNFSDDGLDSFEALTLKLEECNTDERWTPEPPLTDDEQAVSAVNLLSKPKRGPQRKRRQ KRDFQKDILPGLSSLSRPKIIEDIQLIEGLVQASGGSWESSFTRRARCGRTRGRKPRKNQ PATVEIEAEAEAEVSPPLKPDSIGLEADERGMVSWGRTTRRCRKPRCPSGSNIAASS