- Transcript BART1_0-u39181.007
- Transcript IDBART1_0-u39181.007
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220275 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224322 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602226897 | 602225750 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 1.44138 | 0.473428 |
| morex | ETI | 0.853501 | 0.365066 | 0.933273 |
| morex | LEA | 0.508089 | 0.038048 | 0.454772 |
| morex | EPI | 1.10772 | 0.684904 | 0.834075 |
| morex | ROO | 0 | 0 | 0.342838 |
| morex | ROO2 | 0.364884 | 0.122518 | 0.36275 |
| morex | NOD | 0.00800122 | 0.744371 | 0.339188 |
| morex | RAC | 1.40816 | 2.11877 | 2.79625 |
| morex | INF1 | 0.0000334692 | 0 | 0.615212 |
| morex | INF2 | 1.3767 | 0.31233 | 1.73794 |
| morex | CAR5 | 3.17939 | 0.120313 | 1.95269 |
| morex | CAR15 | 0.969459 | 1.18209 | 0.822642 |
| morex | LEM | 1.37599 | 1.72769 | 2.50124 |
| morex | LOD | 4.25678 | 2.61306 | 4.61414 |
| morex | PAL | 2.72678 | 2.78717 | 1.40673 |
| morex | SEN | 0.880443 | 0.893319 | 0.165412 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +1 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +1 | 0.0 | 1388 | 765/987 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4771 bp)
>BART1_0-u39181.007 4771 150831_barley_pseudomolecules GGGGGGCGGAGAGAGAGAGAGAGAATATCAGATGTCAACAAATCTGCTGTCCTTGCGGCT CGTTTAGAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCCCTTCCACCAGAGGA GAGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCAATCCAAAACCCCCA AAAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAGAGAGAGAACAAACC GAGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTTCGTTCGTTCGTTCC GGCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCCTGGCCCCAGCAAAT CCGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTATCCTCCGCCCCGATCGCCC CCCTGCCGCCGCGAGAAAGATTTGTTTTTTGTTTTGTTCTACGAGTACTAGGATAGTATA GATACATAAATATCCTGTCTTGGTTGGGTGGTGCGGGGTTTCTCGGGGCATGGCCGCGGC GGCGGTGCCGGACAGGATGCTCGCTCGCCGAATGCTGCGGGTCGTCAGGCTCAACCCGCT GCAGCGCACTGCCAACAATCCTTCTCCCTGAGGTGAGAATTTCCTTCCTTTCTAGCTAAA TAGTTTCATTAATTCTGCCCGCGCCCTGCCTGGATCGTGGAATCGAGCTAGCAATCTCGC GGAGCGGTGCCGATTGGCTTTCCCGATGTGTTGGAGCCCCAATCCGGGGGCACCTGGGGG GATTGGAGCTCCGATTTCGGACGAATTCGCTCTGTCCCACGTCCCTGTCGCTGTCGCCGT CACTGTTCCTTCGTCCGTTCCTGGCCACCGCCCGACGACCAGATCCGGCCGCCCTCCACG CGGCGCGTCGGCTTCGGTTCATCACCGTCGCGTCCCCGCCCGTGCCGTCGATTCCTCCTC ATTGCCGCCTCCCGCCTGTTGTCTAGATCCGGACGCCTGCCGTCCGTCACCATCCGTTCC TCGCTTTCCTCTTTGTGCTCCAGCCGTCTGGCCCGACTTTGGCGTCCAGATCCGCTTCGC CTTCTCTTCCCACCTCCGTGCCTGTAGCTACCGTTGCTAGTTCGTCGTGCGATTGCCTCT GCTTCCCCGTTATTTCTCTTGAAGTGCCATTCAGATTGGGAGGTAGTATTGATTCAGCTG AGCAAGTCGAGCTGTCTAGTTAGCTCAAAGCATTGAAGATTGGAATTTTACACGTGCATT GCATTAACACTGTGATTTCCCTTTGGTGCCCTGTGATGTGATGATCAGTTCTAGTTGCCG TCCGGGTCAAGGCGAATTTTAGCATGATTGCTACATGCCCATTGTTTTGGGGATCTGCAC ATGGACTCAAATGGTTGGCGCTCTCCATACTATGAGGATAAGCCATCAAATGGGCAGTTG TACAATGGCTTCATGACAAAGCAGGCAGATGGTTATTCAGAGTACGACAACGAAACGCTG AAGCGCACAATGCTTTCACATGAAGCTATGTTTAGACAGCAGGTTTATGAACTGCACCGT GTTTACAAAATACAGAGAGACCTGATGAAGCATTATGAAAGCAAAGACACATATGCATAC CCAGTACTGGCAGATGCATCACAGACAAATTCATCATCACAAGTTCCACCAAATGGCTCA AAGATGATATGGCAGATGCCTCTAGGGGCCAAAACATACGGAGAAGCTACTGTTGCAGTG CACACTGATACAAACCACTCCTTGAAGTTCCTTAGTGATGGCAGTGTTCTGCCCTCTCCA GATGGATTCCCCTCAAATGGTGTTGCTTTAAATACCAAGCAAGGCGTTATTGACCTTGAG CTTCCAGCTGATCATTATATAGATGATGACAACACATCAGATGATAAGCCTATAGATTTC CTTGGAGTAGATTCGGGTACAAAACTGCCGAATGATGCCGGGGTCACATTCAGTGGCGCA GAAGGCTTGGGGAGGTTCAGTGATAATAGCTCAACCTCTGGTTTGCTGGCTACTAATAAA CCGGGAGGCTGCCATGTCGCTGACCTGAATGAGCCAATTACTGGGATGCATATGGGTGGA ACAAACGGGTCAGTACCCAGAGGTCTTCCGTATACCTTGGAGAACTCTTGGCGCCAATCT GCAGTGAGATCAGGCACAGCTAACTTTGGTTTCAATAAAGAATACTCCAAAGAGAAGCAT ACCGATGAAGGAACGAGCTCAAATTTCCTCGATGCAAGTGCCAAACTAAGACAGGAGGAG AAACCATTGATTGATAAAGGAAAACAAGTCAGCAGTCAATCTTTTTTTACACCCAGATAC AGCAATACTGATCTGCAAAAATCCTTCAAGGTTGCTGATGGGAGATCTGCAACCAATGAG TTTATTTACCATGGTCAAAATAGTTCAGTTGGATGGTTTTCAAAAGGTCCTATGGGAGCA TCTGCCGTCAATAATTTTGCTAGACTTGACCATCCACATCATTCAAGTATTGGTACACTT GTTGCTCCAATCTCCATTCCTCACATAGACCATCCTTCCGTCGCCTCTCCTATAGGTTCT TGCACAGTGGACCCAAGGAGCAGTGTTATCAACAATGCTTTCCAGCGAGTTCCAAGTTTC AATGGATCCTCAACTGTTAATTCATACAAGAGTCCTGGTGCTGTGACCCAAAGCATTGGA CCTTCGAGTCACAGCATTGGACCTTCGATTCATAAGCTTAAAAGATTCGATAATTTGGAT GGTAGTTACTTTGGCTTTCCGCTTGATCCATTTTCCGCATCACGATCCAGACAACAGGTT GCAATGTCAAGTGAGTTGGAGCAAAGGAACTGCCTGATGTTTGAACATTCAGCTGCACGG CAGTCTCTTGGGTATACTCAGCCCACAAGCACCAAGGGCACAAAGAACTTTAATCTGAAT GAAGCACTGTCAGATGGTCCAGAAGAGCTTGTAGAACAGGATGGAAGATCTGTTGGCAGT TTGCAGCATAGTAAAGGTGAGGGATCAGTATTTGGGATCTCTTGGCTAAAAAATAGAGCT ACTTGTGCTGATCCAACAGGTTTGGAAAAGCAAAGGAAGGTGTTTGGCCATTCCAATGGG ACTGCAACAGACACGAAAAACAACAACGACTTGACGGGAACAACACCGATTGTTTGCAAT TTGTCAGATTCCGCCTCGACGTCCCTAGGTTGCAGAATTAAGATAGATGATGCTTCTGAT GTCATCACTGATAGAACTTGGCTGGTATGTAATAAGACTGAGGAGAGTACCACGAGACAT TTACCACTTTCATGCCAGAAACCCTTTGACAGAGATGAACAAACTGCTGAAGGTGTTGTC AAGAAAAGTGGCGCCGTCATCAGAAATTTATTTGATCTGAATGATGACATACCACATGAA GATAACTCAGAGTCATCAGTAGTGTCACATGAATGCGACGTGGCGTCGTTACAGAACAAC CATGCTAAGCGCACATTTTTGATTGACTTGGAAGAAATGCCAGCTTGTGAAGATGGTGCT GCCTGGACTTCTCAACAGGAATGCACACCTTCTGGTACGCTTGATGCATGCAAGGAAGCT GATATGTGTTCTCCATCCGCTATGGATGCAGCGCAGATCATTCTTGCGTTGTCAACGGAT GTGCTGACCACCACAGGCACACCCGATGATATGCTGCAGTGGTTTGCTGAGCTCGCGATA TCAAGCACGGATGCCCATGCCGATGAGCAAGCAGAAGCCCAGGGTTGCATCAATAATTTC AGTGATGATGGTTTGGATTCATTTGAAGCCTTGACACTGAAGCTGGAAGAGTGCAATACT GATGAGCGTTGGACACCGGAACCACCACTGACAGACGATGAACAAGCTGTTTCAGCGGTG AACCTGCTGTCCAAGCCAAAAAGAGGACCGCAAAGGAAGCGACGGCAGAAGCGAGACTTC CAGAAGGACATCTTACCTGGTCTCTCGTCACTTTCCCGTCCTAAAATCATAGAGGACATT CAGCTAATTGAGGGGTTAGTACAGGCATCTGGTGGATCATGGGAGTCGAGTTTCACTAGG CGAGCGCGCTGTGGGCGAACAAGAGGTAGAAAGCCCCGCAAAAACCAGCCAGCTACCGTA GAGATAGAAGCTGAGGCCGAGGCCGAGGTGAGCCCGCCCTTGAAACCCGACTCCATTGGC TTAGAAGCTGATGAAAGGGGCATGGTTAGCTGGGGACGAACAACAAGACGGTGTCGCAAG CCGAGATGCCCCTCGGGCAGTAACATCGCGGCTTCGTCTTGAGCGACTGATCTTGGTCAG AGAGAACGTCGGTCACGATCATGTACTTGGGTTCGGGTTCCAGATTTGCCATCGAGATTG CGGTGGACTGGTATAAAGGTAAAAAATCACAGCCATGAGTGTGCATACTCTGCTGGCCTG TTTGGCCGGCCTCCCCCCTGCAGAGATTTCATGCCTTTTCGGGTCGAAACATGGTGTACA TTTTTTTCTATAATAAATTCTTAAACTAGTCTATATGTGACAATTTCTGTAACAGCGTTG TATTAAGCTGGGCTCCAGGGCCTGAGGGGCCTGCTGTAATTCTTGAGATAGTGGCGAGGT ACCTTGACTGTCCGGTATTCAGAAATCAAAAAGGCTAATCGGTGTAGTTCTATATAGTTC TTTTAAATCTTGTTTTGTTTTGTGTTGTGCAAGTTGCTGCTTCATTTGGTTGCAATCTTT GCTTCGCAGCCTGTACAAGTTGGAACGCCGA
Protein Sequence (973 aa)
>BART1_0-u39181.007 973 150831_barley_pseudomolecules MDSNGWRSPYYEDKPSNGQLYNGFMTKQADGYSEYDNETLKRTMLSHEAMFRQQVYELHR VYKIQRDLMKHYESKDTYAYPVLADASQTNSSSQVPPNGSKMIWQMPLGAKTYGEATVAV HTDTNHSLKFLSDGSVLPSPDGFPSNGVALNTKQGVIDLELPADHYIDDDNTSDDKPIDF LGVDSGTKLPNDAGVTFSGAEGLGRFSDNSSTSGLLATNKPGGCHVADLNEPITGMHMGG TNGSVPRGLPYTLENSWRQSAVRSGTANFGFNKEYSKEKHTDEGTSSNFLDASAKLRQEE KPLIDKGKQVSSQSFFTPRYSNTDLQKSFKVADGRSATNEFIYHGQNSSVGWFSKGPMGA SAVNNFARLDHPHHSSIGTLVAPISIPHIDHPSVASPIGSCTVDPRSSVINNAFQRVPSF NGSSTVNSYKSPGAVTQSIGPSSHSIGPSIHKLKRFDNLDGSYFGFPLDPFSASRSRQQV AMSSELEQRNCLMFEHSAARQSLGYTQPTSTKGTKNFNLNEALSDGPEELVEQDGRSVGS LQHSKGEGSVFGISWLKNRATCADPTGLEKQRKVFGHSNGTATDTKNNNDLTGTTPIVCN LSDSASTSLGCRIKIDDASDVITDRTWLVCNKTEESTTRHLPLSCQKPFDRDEQTAEGVV KKSGAVIRNLFDLNDDIPHEDNSESSVVSHECDVASLQNNHAKRTFLIDLEEMPACEDGA AWTSQQECTPSGTLDACKEADMCSPSAMDAAQIILALSTDVLTTTGTPDDMLQWFAELAI SSTDAHADEQAEAQGCINNFSDDGLDSFEALTLKLEECNTDERWTPEPPLTDDEQAVSAV NLLSKPKRGPQRKRRQKRDFQKDILPGLSSLSRPKIIEDIQLIEGLVQASGGSWESSFTR RARCGRTRGRKPRKNQPATVEIEAEAEAEVSPPLKPDSIGLEADERGMVSWGRTTRRCRK PRCPSGSNIAASS