- Transcript BART1_0-u39181.012
- Transcript IDBART1_0-u39181.012
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220337 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224322 | 602224150 | - |
| chr5H | 4 | 602224952 | 602224892 | - |
| chr5H | 5 | 602225112 | 602225079 | - |
| chr5H | 6 | 602226799 | 602226500 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.33903 | 0 | 0 |
| morex | ETI | 5.39195 | 4.36913 | 5.82672 |
| morex | LEA | 0 | 0 | 1.96387 |
| morex | EPI | 7.59626 | 6.46087 | 9.68749 |
| morex | ROO | 0.615438 | 0 | 0 |
| morex | ROO2 | 6.75425 | 5.18377 | 4.89757 |
| morex | NOD | 0 | 2.84473 | 5.24363 |
| morex | RAC | 7.32871 | 10.8023 | 11.5118 |
| morex | INF1 | 0 | 0.551632 | 0.638611 |
| morex | INF2 | 0 | 1.64923 | 0 |
| morex | CAR5 | 0 | 0.0256126 | 0.000000218152 |
| morex | CAR15 | 1.01846 | 0.0000785528 | 0.483049 |
| morex | LEM | 11.9488 | 10.8138 | 10.8358 |
| morex | LOD | 23.5595 | 27.8656 | 21.8382 |
| morex | PAL | 16.0483 | 12.6927 | 15.1355 |
| morex | SEN | 3.95074 | 6.81763 | 4.76679 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +2 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +2 | 0.0 | 1388 | 765/987 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3735 bp)
>BART1_0-u39181.012 3735 150831_barley_pseudomolecules CCTCTTCCCTTCCACCAGAGGAGAGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAA CAACGCCAATCCAAAACCCCCAAAAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTG TGTGTGAGAGAGAGAACAAACCGAGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTT CCTTCGTTCGTTCGTTCGTTCCGGCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCT TCCTGGCCTGGCCCCAGCAAATCCGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGG GTTATTTCTCTTGAAGTGCCATTCAGATTGGGAGTTCTAGTTGCCGTCCGGGTCAAGGCG AATTTTAGCATGATTGCTACATGCCCATTGTTTTGGGGATCTGCACATGGACTCAAATGG TTGGCGCTCTCCATACTATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCAT GACAAAGCAGGCAGATGGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCT TTCACATGAAGCTATGTTTAGACAGCAGGTTTATGAACTGCACCGTGTTTACAAAATACA GAGAGACCTGATGAAGCATTATGAAAGCAAAGACACATATGCATACCCAGTACTGGCAGA TGCATCACAGACAAATTCATCATCACAAGTTCCACCAAATGGCTCAAAGATGATATGGCA GATGCCTCTAGGGGCCAAAACATACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAA CCACTCCTTGAAGTTCCTTAGTGATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTC AAATGGTGTTGCTTTAAATACCAAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCA TTATATAGATGATGACAACACATCAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTC GGGTACAAAACTGCCGAATGATGCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAG GTTCAGTGATAATAGCTCAACCTCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCA TGTCGCTGACCTGAATGAGCCAATTACTGGGATGCATATGGGTGGAACAAACGGGTCAGT ACCCAGAGGTCTTCCGTATACCTTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGG CACAGCTAACTTTGGTTTCAATAAAGAATACTCCAAAGAGAAGCATACCGATGAAGGAAC GAGCTCAAATTTCCTCGATGCAAGTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGA TAAAGGAAAACAAGTCAGCAGTCAATCTTTTTTTACACCCAGATACAGCAATACTGATCT GCAAAAATCCTTCAAGGTTGCTGATGGGAGATCTGCAACCAATGAGTTTATTTACCATGG TCAAAATAGTTCAGTTGGATGGTTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAA TTTTGCTAGACTTGACCATCCACATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTC CATTCCTCACATAGACCATCCTTCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCC AAGGAGCAGTGTTATCAACAATGCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAAC TGTTAATTCATACAAGAGTCCTGGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAG CATTGGACCTTCGATTCATAAGCTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGG CTTTCCGCTTGATCCATTTTCCGCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGA GTTGGAGCAAAGGAACTGCCTGATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTA TACTCAGCCCACAAGCACCAAGGGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGA TGGTCCAGAAGAGCTTGTAGAACAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAA AGGTGAGGGATCAGTATTTGGGATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCC AACAGGTTTGGAAAAGCAAAGGAAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACAC GAAAAACAACAACGACTTGACGGGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGC CTCGACGTCCCTAGGTTGCAGAATTAAGATAGATGATGCTTCTGATGTCATCACTGATAG AACTTGGCTGGTATGTAATAAGACTGAGGAGAGTACCACGAGACATTTACCACTTTCATG CCAGAAACCCTTTGACAGAGATGAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGC CGTCATCAGAAATTTATTTGATCTGAATGATGACATACCACATGAAGATAACTCAGAGTC ATCAGTAGTGTCACATGAATGCGACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCAC ATTTTTGATTGACTTGGAAGAAATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCA ACAGGAATGCACACCTTCTGGTACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCC ATCCGCTATGGATGCAGCGCAGATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCAC AGGCACACCCGATGATATGCTGCAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGC CCATGCCGATGAGCAAGCAGAAGCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTT GGATTCATTTGAAGCCTTGACACTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGAC ACCGGAACCACCACTGACAGACGATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAA GCCAAAAAGAGGACCGCAAAGGAAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTT ACCTGGTCTCTCGTCACTTTCCCGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGG GTTAGTACAGGCATCTGGTGGATCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGG GCGAACAAGAGGTAGAAAGCCCCGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGA GGCCGAGGCCGAGGTGAGCCCGCCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGA AAGGGGCATGGTTAGCTGGGGACGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTC GGGCAGTAACATCGCGGCTTCGTCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTC ACGATCATGTACTTGGGTTCGGGTTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTAT AAAGGTAAAAAATCACAGCCATGAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCC CCCCTGCAGAGATTTCATGCCTTTTCGGGTCGAAACATGGTGTACATTTTTTTCTATAAT AAATTCTTAAACTAGTCTATATGTGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCT CCAGGGCCTGAGGGGCCTGCTGTAATTCTTGAGATAGTGGCGAGGTACCTTGACTGTCCG GTATTCAGAAATCAAAAAGGCTAATCGGTGTAGTTCTATATAGTTCTTTTAAATCTTGTT TTGTTTTGTGTTGTG
Protein Sequence (973 aa)
>BART1_0-u39181.012 973 150831_barley_pseudomolecules MDSNGWRSPYYEDKPSNGQLYNGFMTKQADGYSEYDNETLKRTMLSHEAMFRQQVYELHR VYKIQRDLMKHYESKDTYAYPVLADASQTNSSSQVPPNGSKMIWQMPLGAKTYGEATVAV HTDTNHSLKFLSDGSVLPSPDGFPSNGVALNTKQGVIDLELPADHYIDDDNTSDDKPIDF LGVDSGTKLPNDAGVTFSGAEGLGRFSDNSSTSGLLATNKPGGCHVADLNEPITGMHMGG TNGSVPRGLPYTLENSWRQSAVRSGTANFGFNKEYSKEKHTDEGTSSNFLDASAKLRQEE KPLIDKGKQVSSQSFFTPRYSNTDLQKSFKVADGRSATNEFIYHGQNSSVGWFSKGPMGA SAVNNFARLDHPHHSSIGTLVAPISIPHIDHPSVASPIGSCTVDPRSSVINNAFQRVPSF NGSSTVNSYKSPGAVTQSIGPSSHSIGPSIHKLKRFDNLDGSYFGFPLDPFSASRSRQQV AMSSELEQRNCLMFEHSAARQSLGYTQPTSTKGTKNFNLNEALSDGPEELVEQDGRSVGS LQHSKGEGSVFGISWLKNRATCADPTGLEKQRKVFGHSNGTATDTKNNNDLTGTTPIVCN LSDSASTSLGCRIKIDDASDVITDRTWLVCNKTEESTTRHLPLSCQKPFDRDEQTAEGVV KKSGAVIRNLFDLNDDIPHEDNSESSVVSHECDVASLQNNHAKRTFLIDLEEMPACEDGA AWTSQQECTPSGTLDACKEADMCSPSAMDAAQIILALSTDVLTTTGTPDDMLQWFAELAI SSTDAHADEQAEAQGCINNFSDDGLDSFEALTLKLEECNTDERWTPEPPLTDDEQAVSAV NLLSKPKRGPQRKRRQKRDFQKDILPGLSSLSRPKIIEDIQLIEGLVQASGGSWESSFTR RARCGRTRGRKPRKNQPATVEIEAEAEAEVSPPLKPDSIGLEADERGMVSWGRTTRRCRK PRCPSGSNIAASS