- Transcript BART1_0-u39181.004
- Transcript IDBART1_0-u39181.004
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220146 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224322 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602227791 | 602226500 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.00000000743216 | 0 | 0 |
| morex | LOD | 0.00130672 | 0.0000508947 | 0.000000103785 |
| morex | PAL | 0 | 0 | 0.0416578 |
| morex | SEN | 0 | 0 | 0.000000206666 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +1 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +1 | 0.0 | 1388 | 765/987 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5044 bp)
>BART1_0-u39181.004 5044 150831_barley_pseudomolecules CAAGTTTGCCATAAAATACGAGAGGGGCTAATAAACCCGTACGGACGTAGCAGTAACTCA TTGACATACACTATTCCACAATCCAAAGCCACAAGTGCACACGAAATCCAATAAGTAATA GTAGTACTAGTAAAATATACATCAACACATCAAACATGCACTATTCCAAAGCCATAAGTG CATGGAAAATACATTCAACATGTCCAACCACCATTACCAGTACCAGTACATGCCGCTATA GTGCTCCTTGCAGTAGTAGTACTTGCTGAAAGGAGTCCAAGACAAGCGCGTTGATGCATT TGGTTTTTGTTGCCATGTAAAGGTCCGGACGGCGTGTACGTAGCAGCGCAGATGCAAAGC CCAGGAGGGAGATAAAAAAAGGCATGCATCACGAGGGGAGGGATAAAAAGATGGCCGGTT TTGCAAGGTTTGGAAAGCAGGTTTGGTGGTACTGTCCTCGAGTATTTTAACAGTTGCCGT TTCTCCCTCTCCCCCCCCACCGCACCAAGGGTGGACAGATTCTCTCCCATGTCCCAATCC CTAAACTCCCCCATTATATTACTCTAGAAACACACCAAACCGAGGAAAGAAATCAATCAT CCTCGTGATAACTGTCTCGTAGGAAATCCGATCCTCCAGAATAATTGTATCATATCAGCA CACTTGGGATCGGAAAGGAAGGAAAATGGAATGAACTAGGAGGACTGGTTCCACACCGGA ATTGTGAGAGGGACAGCAGACGGTGGCGATGTGGTGGCAGGGCAGGGCAGGGCAGGGGAG GGGAGATAATAGTATTATAATATTGGGAAATGTCTGAGTTGAGTTGGTGATTGATGAGAG AGAAAGACGGAGGGAGAGGGACAAGGGGTGGGGTGATGGGGAGGATCAGCATCAGGGGGG CGGAGAGAGAGAGAGAGAATATCAGATGTCAACAAATCTGCTGTCCTTGCGGCTCGTTTA GAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCCCTTCCACCAGAGGAGAGAGA AAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCAATCCAAAACCCCCAAAAGGA GCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAGAGAGAGAACAAACCGAGATA CTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTTCGTTCGTTCGTTCCGGCAGG AGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCCTGGCCCCAGCAAATCCGATT CCAACCTCCGCCCGGATACATCGGAGCTCCGGGTTATTTCTCTTGAAGTGCCATTCAGAT TGGGAGGTAGTATTGATTCAGCTGAGCAAGTCGAGCTGTCTAGTTAGCTCAAAGCATTGA AGATTGGAATTTTACACGTGCATTGCATTAACACTGTGATTTCCCTTTGGTGCCCTGTGA TGTGATGATCAGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAGCATGATTGCTACAT GCCCATTGTTTTGGGGATCTGCACATGGACTCAAATGGTTGGCGCTCTCCATACTATGAG GATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCATGACAAAGCAGGCAGATGGTTAT TCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCTTTCACATGAAGCTATGTTTAGA CAGCAGGTTTATGAACTGCACCGTGTTTACAAAATACAGAGAGACCTGATGAAGCATTAT GAAAGCAAAGACACATATGCATACCCAGTACTGGCAGATGCATCACAGACAAATTCATCA TCACAAGTTCCACCAAATGGCTCAAAGATGATATGGCAGATGCCTCTAGGGGCCAAAACA TACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAACCACTCCTTGAAGTTCCTTAGT GATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTGTTGCTTTAAATACC AAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCATTATATAGATGATGACAACACA TCAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTCGGGTACAAAACTGCCGAATGAT GCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTGATAATAGCTCAACC TCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCATGTCGCTGACCTGAATGAGCCA ATTACTGGGATGCATATGGGTGGAACAAACGGGTCAGTACCCAGAGGTCTTCCGTATACC TTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTAACTTTGGTTTCAAT AAAGAATACTCCAAAGAGAAGCATACCGATGAAGGAACGAGCTCAAATTTCCTCGATGCA AGTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGATAAAGGAAAACAAGTCAGCAGT CAATCTTTTTTTACACCCAGATACAGCAATACTGATCTGCAAAAATCCTTCAAGGTTGCT GATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAAAATAGTTCAGTTGGATGG TTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTTGCTAGACTTGACCATCCA CATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATTCCTCACATAGACCATCCT TCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCAGTGTTATCAACAAT GCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTTAATTCATACAAGAGTCCT GGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATTGGACCTTCGATTCATAAG CTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTTCCGCTTGATCCATTTTCC GCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGCAAAGGAACTGCCTG ATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGCCCACAAGCACCAAG GGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGTCCAGAAGAGCTTGTAGAA CAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGGGATCAGTATTTGGG ATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACAGGTTTGGAAAAGCAAAGG AAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAAAACAACAACGACTTGACG GGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCGACGTCCCTAGGTTGCAGA ATTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACTTGGCTGGTATGTAATAAG ACTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAGAAACCCTTTGACAGAGAT GAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCAGAAATTTATTTGAT CTGAATGATGACATACCACATGAAGATAACTCAGAGTCATCAGTAGTGTCACATGAATGC GACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTTTTGATTGACTTGGAAGAA ATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAGGAATGCACACCTTCTGGT ACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTATGGATGCAGCGCAG ATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGCACACCCGATGATATGCTG CAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCATGCCGATGAGCAAGCAGAA GCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGATTCATTTGAAGCCTTGACA CTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCGGAACCACCACTGACAGAC GATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAAGAGGACCGCAAAGG AAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCTGGTCTCTCGTCACTTTCC CGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTAGTACAGGCATCTGGTGGA TCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAAGAGGTAGAAAGCCC CGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGGCCGAGGTGAGCCCG CCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCATGGTTAGCTGGGGA CGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTAACATCGCGGCTTCG TCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTCACGATCATGTACTTGGGTTCGG GTTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTATAAAGGTAAAAAATCACAGCCAT GAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCAGAGATTTCATGCCT TTTCGGGTCGAAACATGGTGTACATTTTTTTCTATAATAAATTCTTAAACTAGTCTATAT GTGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCCTGAGGGGCCTGCTG TAATTCTTGAGATAGTGGCGAGGTACCTTGACTGTCCGGTATTCAGAAATCAAAAAGGCT AATCGGTGTAGTTCTATATAGTTCTTTTAAATCTTGTTTTGTTTTGTGTTGTGCAAGTTG CTGCTTCATTTGGTTGCAATCTTTGCTTCGCAGCCTGTACAAGTTGGAACGCCGATTCGT GTGGTATACCACCGTTGAGGACTTGATCCAGACAGAACTGGTAGTTCATGGCTTATTTGC AATAGGTTTATTTTCAACAACTTCGATAGGAGCTGAACTACTAGTACCCTTTGAGAAAGA AGAG
Protein Sequence (973 aa)
>BART1_0-u39181.004 973 150831_barley_pseudomolecules MDSNGWRSPYYEDKPSNGQLYNGFMTKQADGYSEYDNETLKRTMLSHEAMFRQQVYELHR VYKIQRDLMKHYESKDTYAYPVLADASQTNSSSQVPPNGSKMIWQMPLGAKTYGEATVAV HTDTNHSLKFLSDGSVLPSPDGFPSNGVALNTKQGVIDLELPADHYIDDDNTSDDKPIDF LGVDSGTKLPNDAGVTFSGAEGLGRFSDNSSTSGLLATNKPGGCHVADLNEPITGMHMGG TNGSVPRGLPYTLENSWRQSAVRSGTANFGFNKEYSKEKHTDEGTSSNFLDASAKLRQEE KPLIDKGKQVSSQSFFTPRYSNTDLQKSFKVADGRSATNEFIYHGQNSSVGWFSKGPMGA SAVNNFARLDHPHHSSIGTLVAPISIPHIDHPSVASPIGSCTVDPRSSVINNAFQRVPSF NGSSTVNSYKSPGAVTQSIGPSSHSIGPSIHKLKRFDNLDGSYFGFPLDPFSASRSRQQV AMSSELEQRNCLMFEHSAARQSLGYTQPTSTKGTKNFNLNEALSDGPEELVEQDGRSVGS LQHSKGEGSVFGISWLKNRATCADPTGLEKQRKVFGHSNGTATDTKNNNDLTGTTPIVCN LSDSASTSLGCRIKIDDASDVITDRTWLVCNKTEESTTRHLPLSCQKPFDRDEQTAEGVV KKSGAVIRNLFDLNDDIPHEDNSESSVVSHECDVASLQNNHAKRTFLIDLEEMPACEDGA AWTSQQECTPSGTLDACKEADMCSPSAMDAAQIILALSTDVLTTTGTPDDMLQWFAELAI SSTDAHADEQAEAQGCINNFSDDGLDSFEALTLKLEECNTDERWTPEPPLTDDEQAVSAV NLLSKPKRGPQRKRRQKRDFQKDILPGLSSLSRPKIIEDIQLIEGLVQASGGSWESSFTR RARCGRTRGRKPRKNQPATVEIEAEAEAEVSPPLKPDSIGLEADERGMVSWGRTTRRCRK PRCPSGSNIAASS