- Transcript BART1_0-u39181.010
- Transcript IDBART1_0-u39181.010
- Gene IDBART1_0-u39181
Barley RTD
Exon Structure of BART1_0-u39181.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222709 | 602220328 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224322 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602226814 | 602226266 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.9357 | 7.67536 | 6.49587 |
| morex | ETI | 1.45846 | 3.79185 | 3.51534 |
| morex | LEA | 4.50262 | 5.00533 | 3.18921 |
| morex | EPI | 4.87472 | 9.67678 | 3.99525 |
| morex | ROO | 2.68635 | 5.54672 | 1.10746 |
| morex | ROO2 | 4.04707 | 5.14009 | 3.8842 |
| morex | NOD | 7.07955 | 6.38091 | 6.38612 |
| morex | RAC | 9.88976 | 9.45289 | 7.91551 |
| morex | INF1 | 19.0077 | 16.3221 | 16.1431 |
| morex | INF2 | 20.49 | 21.9868 | 22.3298 |
| morex | CAR5 | 6.32237 | 7.1868 | 8.38735 |
| morex | CAR15 | 2.18007 | 1.99274 | 2.61333 |
| morex | LEM | 8.57686 | 8.02757 | 9.29714 |
| morex | LOD | 16.8381 | 16.9314 | 19.9876 |
| morex | PAL | 9.81012 | 8.82889 | 14.9377 |
| morex | SEN | 2.54053 | 3.52521 | 4.71306 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +1 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +1 | 0.0 | 859 | 509/661 (77%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4082 bp)
>BART1_0-u39181.010 4082 150831_barley_pseudomolecules GGTTCCATTCCATCCCCTCTTCCCTTCCACCAGAGGAGAGAGAAAGAAAGAGAGAGAGAG GGAGGCCAGGCCAAACAACGCCAATCCAAAACCCCCAAAAGGAGCAAGGAAAGAGAAGAG AGAGTGGGGAGTGTGTGTGTGAGAGAGAGAACAAACCGAGATACTCCCACATCCGAGAGC AGACAGTGGTTCCTTCCTTCGTTCGTTCGTTCGTTCCGGCAGGAGCAAGAACCCACCGCT TTCTCCCCCTCTTCTTCCTGGCCTGGCCCCAGCAAATCCGATTCCAACCTCCGCCCGGAT ACATCGGAGCTCCGGGTATCCTCCGCCCCGATCGCCCCCCTGCCGCCGCGAGAAAGATTT GTTTTTTGTTTTGTTCTACGAGTACTAGGATAGTATAGATACATAAATATCCTGTCTTGG TTGGGTGGTGCGGGGTTTCTCGGGGCATGGCCGCGGCGGCGGTGCCGGACAGGATGCTCG CTCGCCGAATGCTGCGGGTCGTCAGGCTCAACCCGCTGCAGCGCACTGCCAACAATCCTT CTCCCTGAGGTTATTTCTCTTGAAGTGCCATTCAGATTGGGAGGTAGTATTGATTCAGCT GAGCAAGTCGAGCTGTCTAGTTAGCTCAAAGCATTGAAGATTGGAATTTTACACGTGCAT TGCATTAACACTGTGATTTCCCTTTGGTGCCCTGTGATGTGATGATCAGTTCTAGTTGCC GTCCGGGTCAAGGCGAATTTTAGCATGATTGCTACATGCCCATTGTTTTGGGGATCTGCA CATGGACTCAAATGGTTGGCGCTCTCCATACTATGAGGATAAGCCATCAAATGGGCAGTT GTACAATGGCTTCATGACAAAGCAGGCAGATGGTTATTCAGAGTACGACAACGAAACGCT GAAGCGCACAATGCTTTCACATGAAGCTATGTTTAGACAGCAGGTTTATGAACTGCACCG TGTTTACAAAATACAGAGAGACCTGATGAAGCATTATGAAAGCAAAGACACATATGCATA CCCAGTACTGGCAGATGCATCACAGACAAATTCATCATCACAAGTTCCACCAAATGGCTC AAAGATGATATGGCAGATGCCTCTAGGGGCCAAAACATACGGAGAAGCTACTGTTGCAGT GCACACTGATACAAACCACTCCTTGAAGTTCCTTAGTGATGGCAGTGTTCTGCCCTCTCC AGATGGATTCCCCTCAAATGGTGTTGCTTTAAATACCAAGCAAGGCGTTATTGACCTTGA GCTTCCAGCTGATCATTATATAGATGATGACAACACATCAGATGATAAGCCTATAGATTT CCTTGGAGTAGATTCGGGTACAAAACTGCCGAATGATGCCGGGGTCACATTCAGTGGCGC AGAAGGCTTGGGGAGGTTCAGTGATAATAGCTCAACCTCTGGTTTGCTGGCTACTAATAA ACCGGGAGGCTGCCATGTCGCTGACCTGAATGAGCCAATTACTGGGATGCATATGGGTGG AACAAACGGGTCAGTACCCAGAGGTCTTCCGTATACCTTGGAGAACTCTTGGCGCCAATC TGCAGTGAGATCAGGCACAGCTAACTTTGGTTTCAATAAAGAATACTCCAAAGAGAAGCA TACCGATGAAGGAACGAGCTCAAATTTCCTCGATGCAAGTGCCAAACTAAGACAGGAGGA GAAACCATTGATTGATAAAGATACAGCAATACTGATCTGCAAAAATCCTTCAAGGTTGCT GATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAAAATAGTTCAGTTGGATGG TTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTTGCTAGACTTGACCATCCA CATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATTCCTCACATAGACCATCCT TCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCAGTGTTATCAACAAT GCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTTAATTCATACAAGAGTCCT GGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATTGGACCTTCGATTCATAAG CTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTTCCGCTTGATCCATTTTCC GCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGCAAAGGAACTGCCTG ATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGCCCACAAGCACCAAG GGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGTCCAGAAGAGCTTGTAGAA CAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGGGATCAGTATTTGGG ATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACAGGTTTGGAAAAGCAAAGG AAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAAAACAACAACGACTTGACG GGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCGACGTCCCTAGGTTGCAGA ATTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACTTGGCTGGTATGTAATAAG ACTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAGAAACCCTTTGACAGAGAT GAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCAGAAATTTATTTGAT CTGAATGATGACATACCACATGAAGATAACTCAGAGTCATCAGTAGTGTCACATGAATGC GACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTTTTGATTGACTTGGAAGAA ATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAGGAATGCACACCTTCTGGT ACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTATGGATGCAGCGCAG ATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGCACACCCGATGATATGCTG CAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCATGCCGATGAGCAAGCAGAA GCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGATTCATTTGAAGCCTTGACA CTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCGGAACCACCACTGACAGAC GATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAAGAGGACCGCAAAGG AAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCTGGTCTCTCGTCACTTTCC CGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTAGTACAGGCATCTGGTGGA TCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAAGAGGTAGAAAGCCC CGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGGCCGAGGTGAGCCCG CCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCATGGTTAGCTGGGGA CGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTAACATCGCGGCTTCG TCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTCACGATCATGTACTTGGGTTCGG GTTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTATAAAGGTAAAAAATCACAGCCAT GAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCAGAGATTTCATGCCT TTTCGGGTCGAAACATGGTGTACATTTTTTTCTATAATAAATTCTTAAACTAGTCTATAT GTGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCCTGAGGGGCCTGCTG TAATTCTTGAGATAGTGGCGAGGTACCTTGACTGTCCGGTATTCAGAAATCAAAAAGGCT AATCGGTGTAGTTCTATATAGTTCTTTTAAATCTTGTTTTGTTTTGTGTTGTGCAAGTTG CT
Protein Sequence (616 aa)
>BART1_0-u39181.010 616 150831_barley_pseudomolecules MGASAVNNFARLDHPHHSSIGTLVAPISIPHIDHPSVASPIGSCTVDPRSSVINNAFQRV PSFNGSSTVNSYKSPGAVTQSIGPSSHSIGPSIHKLKRFDNLDGSYFGFPLDPFSASRSR QQVAMSSELEQRNCLMFEHSAARQSLGYTQPTSTKGTKNFNLNEALSDGPEELVEQDGRS VGSLQHSKGEGSVFGISWLKNRATCADPTGLEKQRKVFGHSNGTATDTKNNNDLTGTTPI VCNLSDSASTSLGCRIKIDDASDVITDRTWLVCNKTEESTTRHLPLSCQKPFDRDEQTAE GVVKKSGAVIRNLFDLNDDIPHEDNSESSVVSHECDVASLQNNHAKRTFLIDLEEMPACE DGAAWTSQQECTPSGTLDACKEADMCSPSAMDAAQIILALSTDVLTTTGTPDDMLQWFAE LAISSTDAHADEQAEAQGCINNFSDDGLDSFEALTLKLEECNTDERWTPEPPLTDDEQAV SAVNLLSKPKRGPQRKRRQKRDFQKDILPGLSSLSRPKIIEDIQLIEGLVQASGGSWESS FTRRARCGRTRGRKPRKNQPATVEIEAEAEAEVSPPLKPDSIGLEADERGMVSWGRTTRR CRKPRCPSGSNIAASS