Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU2Hr1G013400	88.6	+	+	4171	-536	Containing
HORVU2Hr1G013410	6.9	+	+	326	-4381	Containing

Transcripts from Gene BART1_0-u07987

Transcript	Length(bp)	Description
BART1_0-u07987.001	3462	3462 bp MSTRG.7987.1 MSTRG.7987
BART1_0-u07987.002	3439	3439 bp MSTRG.7987.2 MSTRG.7987
BART1_0-u07987.003	3501	3501 bp MSTRG.7987.3 MSTRG.7987
BART1_0-u07987.004	3198	3198 bp MSTRG.7987.4 MSTRG.7987
BART1_0-u07987.005	3072	3072 bp MSTRG.7987.5 MSTRG.7987
BART1_0-u07987.006	3410	3410 bp MSTRG.7987.6 MSTRG.7987
BART1_0-u07987.007	2686	2686 bp MSTRG.7987.7 MSTRG.7987
BART1_0-u07987.008	3380	3380 bp MSTRG.7987.8 MSTRG.7987
BART1_0-u07987.009	3359	3359 bp MSTRG.7987.9 MSTRG.7987
BART1_0-u07987.010	3506	3506 bp MSTRG.7987.10 MSTRG.7987
BART1_0-u07987.011	2936	2936 bp MSTRG.7987.11 MSTRG.7987
BART1_0-u07987.012	2735	2735 bp MSTRG.7987.12 MSTRG.7987
BART1_0-u07987.013	3174	3174 bp MSTRG.7987.13 MSTRG.7987
BART1_0-u07987.014	3315	3315 bp MSTRG.7987.14 MSTRG.7987
BART1_0-u07987.015	3088	3088 bp MSTRG.7987.15 MSTRG.7987
BART1_0-u07987.016	3250	3250 bp MSTRG.7987.16 MSTRG.7987
BART1_0-u07987.017	3095	3095 bp MSTRG.7987.17 MSTRG.7987
BART1_0-u07987.018	3063	3063 bp MSTRG.7987.18 MSTRG.7987
BART1_0-u07987.019	2134	2134 bp MSTRG.7987.19 MSTRG.7987
BART1_0-u07987.020	2814	2814 bp MSTRG.7987.20 MSTRG.7987
BART1_0-u07987.021	2752	2752 bp MSTRG.7987.21 MSTRG.7987
BART1_0-u07987.022	2972	2972 bp MSTRG.7987.22 MSTRG.7987
BART1_0-u07987.023	3358	3358 bp MSTRG.7987.23 MSTRG.7987
BART1_0-u07987.024	2640	2640 bp MSTRG.7987.24 MSTRG.7987
BART1_0-u07987.025	3116	3116 bp MSTRG.7987.25 MSTRG.7987
BART1_0-u07987.026	1955	1955 bp MSTRG.7987.26 MSTRG.7987
BART1_0-u07987.027	2873	2873 bp MSTRG.7987.27 MSTRG.7987
BART1_0-u07987.028	3159	3159 bp MSTRG.7987.28 MSTRG.7987
BART1_0-u07987.029	2965	2965 bp MSTRG.7987.29 MSTRG.7987
BART1_0-u07987.030	2773	2773 bp MSTRG.7987.30 MSTRG.7987
BART1_0-u07987.031	2533	2533 bp MSTRG.7987.31 MSTRG.7987
BART1_0-u07987.032	2801	2801 bp MSTRG.7987.32 MSTRG.7987
BART1_0-u07987.033	3277	3277 bp MSTRG.7987.33 MSTRG.7987
BART1_0-u07987.034	2534	2534 bp MSTRG.7987.34 MSTRG.7987
BART1_0-u07987.035	2435	2435 bp MSTRG.7987.35 MSTRG.7987
BART1_0-u07987.036	3148	3148 bp MSTRG.7987.36 MSTRG.7987
BART1_0-u07987.037	3019	3019 bp MSTRG.7987.37 MSTRG.7987
BART1_0-u07987.038	2652	2652 bp MSTRG.7987.38 MSTRG.7987
BART1_0-u07987.039	3047	3047 bp MSTRG.7987.39 MSTRG.7987
BART1_0-u07987.040	2906	2906 bp MSTRG.7987.40 MSTRG.7987
BART1_0-u07987.041	2654	2654 bp MSTRG.7987.41 MSTRG.7987
BART1_0-u07987.042	2713	2713 bp MSTRG.7987.42 MSTRG.7987
BART1_0-u07987.043	2794	2794 bp MSTRG.7987.43 MSTRG.7987
BART1_0-u07987.044	2780	2780 bp MSTRG.7987.44 MSTRG.7987
BART1_0-u07987.045	2573	2573 bp MSTRG.7987.45 MSTRG.7987
BART1_0-u07987.046	1706	1706 bp MSTRG.7987.46 MSTRG.7987
BART1_0-u07987.047	2517	2517 bp MSTRG.7987.47 MSTRG.7987

Exon Structure of BART1_0-u07987

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os07g49460.2	+2	0.0	655	429/685 (63%)	protein|response regulator receiver domain containing protein, expressed
TAIR PP10	AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR	+2	2e-70	251	191/456 (42%)	Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727
BRACH PP3	Bradi1g16490.7.p	+2	0.0	750	475/677 (70%)	pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0005634	nucleus
GO:0000160	phosphorelay signal transduction system
GO:0048579	negative regulation of long-day photoperiodism, flowering

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons