- Transcript BART1_0-u07987.043
- Transcript IDBART1_0-u07987.043
- Gene IDBART1_0-u07987
Barley RTD
Exon Structure of BART1_0-u07987.043
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29124217 | 29123762 | + |
| chr2H | 2 | 29124505 | 29124317 | + |
| chr2H | 3 | 29124781 | 29124617 | + |
| chr2H | 4 | 29124992 | 29124859 | + |
| chr2H | 5 | 29125344 | 29125189 | + |
| chr2H | 6 | 29125924 | 29125786 | + |
| chr2H | 7 | 29126484 | 29126067 | + |
| chr2H | 8 | 29127230 | 29126567 | + |
| chr2H | 9 | 29127802 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.426844 | 1.99378 | 1.09457 |
| morex | ETI | 0.895225 | 0.0501895 | 0.0916867 |
| morex | LEA | 7.80114 | 7.36372 | 9.18356 |
| morex | EPI | 60.7438 | 44.0068 | 74.6849 |
| morex | ROO | 0.680418 | 0.510422 | 0.711106 |
| morex | ROO2 | 0.667203 | 0.175653 | 0.810421 |
| morex | NOD | 2.47187 | 8.73152 | 9.79114 |
| morex | RAC | 5.20377 | 3.58036 | 4.81438 |
| morex | INF1 | 5.48268 | 7.91353 | 10.6109 |
| morex | INF2 | 12.4187 | 11.4773 | 12.8288 |
| morex | CAR5 | 1.81215 | 3.03743 | 2.81924 |
| morex | CAR15 | 1.55827 | 0.00202087 | 0.869194 |
| morex | LEM | 17.0657 | 14.7007 | 7.1808 |
| morex | LOD | 1.63827 | 3.0607 | 1.81808 |
| morex | PAL | 7.7314 | 6.05209 | 8.64434 |
| morex | SEN | 23.3923 | 16.4768 | 14.3809 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +3 | 0.0 | 632 | 415/683 (61%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+3 | 6e-72 | 252 | 189/453 (42%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.7.p | +3 | 0.0 | 736 | 469/669 (70%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2794 bp)
>BART1_0-u07987.043 2794 150831_barley_pseudomolecules CACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATGGC CTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGGTGCGCTCCCGCCCGTCTATGGTC ACCCACGCGCTCTGTTTCCGCTCGATTGGGGGATCGAATCACCCGTTTCAATCTCAATCT ACGTGCGTGTGGATCCAGGGCACGCTCAGGCTCTCTCTAGCTGCTGCTAATAGTATGTGT CCGGAAATTGCTGGAGATTAACCGGCTCGCACGCCTTGTCTGCTACTGCCCCCCCTTATA GCCGCCGGCAGCTCCATTCCAGGAGACGATTCATTCCGCTGCAGTCTCAACCCCCTTGCT CTTGTGTGTTTTTTTTGCGTTTTGTTTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGTCG ACGACGAACGCCGTGGGACTCCCGGATGCGACCGAGCCAGGCAGCCTCCTCCTAGCGCCA TGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCCGCCCAGCCGCGATGCT GGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTGGAGACCGACGACTCCA CCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAAGTTATCCCCGTCGAGA ACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAACATCGACCTTGTTCTCA CAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTCGGCAGGATCATGAACC ACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCACGATTCCATGGGCACCG TCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAGCCGATACGTAAGAACG AGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGCTCCAGTGGCAGTGGTA GTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCGGCGATGATTCCAATA ACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATGCAAGGGATGGCAGCG ATAATGGCAGTGGCACTCAGAGCTCATGGACAAAGCGTGCCGTTGAGATCGACAGTCCCC AGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGGCACTTGTGCCCATGTGAACC ATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAGGTGATGGATTCAAAGGCAAGG AGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCCGAACGAGA GTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTCCAGTGATA CGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGGTTCGATGG CCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAACTGCTCCT TACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCTTGAGCTGA GCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAACAGAGGA ACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTACAATATGTGTGCGGTCTCCA ATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCG CGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACA TGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCA TCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAG CAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAG CAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACG TGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGG TTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACACCAATAACG GGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCG TCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACA AGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGA AGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGC CGGCGACCGTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAA TTAGACAGCTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTG GAAGAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATG CCGGCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAG GCTCCCGCTCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTA GTATGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTC AGGTGTCATCAATCAACGCATATTTGTGGTTTCT
Protein Sequence (646 aa)
>BART1_0-u07987.043 646 150831_barley_pseudomolecules MDNQQQQQPPRGEHAAQPRCWEEFLHRKTIRVLLVETDDSTRQVVAALLRHCMYQVIPVE NGHQAWAYLQDMQSNIDLVLTEVFMHGGLSGIDLLGRIMNHEVCKDIPVIMMSSHDSMGT VLSCLSNGAADFLAKPIRKNELKNLWAHVWRRSHSSSGSGSGSAIQTQKCTKSKSGDDSN NNSNDRNDDASMGLNARDGSDNGSGTQSSWTKRAVEIDSPQDMSPDQSADPPEGTCAHVN HPKSEICSNRWLPGDGFKGKELEIGAPGNLNTDDQSSPNESSVKPTDGRCEYLPQNNSSD TVMENLEEPIVRAADLIGSMAKNMDAQQAAARAIDAPNCSLQASEGKDTDGENAMPYLEL SLKRSRSTGEGAGPIQEEQRNVVRRSDLSAFTRYNMCAVSNQGGAGFVGSCSPNGDSSEA AKTVAAQMKQGSNGSSNNNDMGSTTKSVVTKPCGNNKVSPINGNTHTSAFHRVQPWTPAT AAGKDKADEVSKKNVAAAAAAAKEMGCEAQSKHPCAAADDVNGGSAGGTAQSSVVNPSGP VEGHTANYGSNSFSNNNTNNGSTAATTAAAAAVHAETGGGVDKRSNMMNMKRERRVAAVN KFREKRKERNFGKKVRYQSRKRLAEQRPRVRWQFVRQPPAPATVER