- Transcript BART1_0-u07987.027
- Transcript IDBART1_0-u07987.027
- Gene IDBART1_0-u07987
Barley RTD
Exon Structure of BART1_0-u07987.027
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29123857 | 29123736 | + |
| chr2H | 2 | 29124505 | 29124063 | + |
| chr2H | 3 | 29124781 | 29124617 | + |
| chr2H | 4 | 29124992 | 29124859 | + |
| chr2H | 5 | 29125344 | 29125189 | + |
| chr2H | 6 | 29125974 | 29125786 | + |
| chr2H | 7 | 29127230 | 29126067 | + |
| chr2H | 8 | 29127829 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.145769 | 0.91567 | 0.428129 |
| morex | ETI | 0 | 0 | 0.128332 |
| morex | LEA | 0.75127 | 1.64264 | 1.95737 |
| morex | EPI | 6.75951 | 10.3835 | 15.1181 |
| morex | ROO | 0 | 0.245415 | 0.097959 |
| morex | ROO2 | 0 | 0.179642 | 0.18916 |
| morex | NOD | 1.35268 | 2.44792 | 4.26685 |
| morex | RAC | 1.69424 | 2.66184 | 1.78223 |
| morex | INF1 | 3.05592 | 3.27701 | 3.29258 |
| morex | INF2 | 3.24183 | 3.79078 | 2.19234 |
| morex | CAR5 | 0.214825 | 0.478066 | 0.458967 |
| morex | CAR15 | 0.136495 | 0.535907 | 0.397052 |
| morex | LEM | 5.58733 | 3.79811 | 3.61594 |
| morex | LOD | 0 | 0.602878 | 0.211076 |
| morex | PAL | 2.0668 | 1.58324 | 1.93217 |
| morex | SEN | 2.09316 | 3.16017 | 1.69433 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +1 | 5e-139 | 338 | 189/255 (74%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+1 | 6e-61 | 221 | 135/269 (50%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g65910.4.p | +1 | 2e-113 | 294 | 178/293 (61%) | pacid=32794230 transcript=Bradi1g65910.4 locus=Bradi1g65910 ID=Bradi1g65910.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2873 bp)
>BART1_0-u07987.027 2873 150831_barley_pseudomolecules CCTCCCTCGCCTCCCACACCCACCCACACACACAGCACACCCTCCTCGGCTCGACTCGAC TCGCCGCCGCCGCCGCAGTCCATGGCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCA AGCCGCCGGCAGCTCCATTCCAGGAGACGATTCATTCCGCTGCAGTCTCAACCCCCTTGC TCTTGTGTGTTTTTTTTGCGTTTTGTTTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGTC GACGACGAACGCCGTGGGACTCCCGGATGCGACCGAGGTTCGACTGTCATTCACGGCCCT ATTGCTTGCTGTTGCTGCTGGCTCCTGCCTCCGCGTCAACCACCACCAAACGACCCCAAC ATGTTTCCTCTTGGAGCCAGGCAGCCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCAG CAGCCGCCGCGCGGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAGG AAGACCATCCGGGTCCTGCTCGTGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGCC CTGCTCCGCCACTGCATGTACCAAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGCG TATCTTCAGGACATGCAGAGCAACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGGC GGCCTCTCCGGGATCGACCTGCTCGGCAGGATCATGAACCACGAGGTCTGCAAGGACATC CCCGTCATCATGATGTCGTCGCACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAAT GGTGCTGCTGACTTCTTGGCCAAGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGCG CATGTGTGGCGACGGTCTCACAGCTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACT CAGAAGTGTACCAAATCAAAGAGCGGCGATGATTCCAATAACAACAGCAATGATCGCAAC GACGATGCCAGCATGGGGCTCAATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCAG AGCTCATGGACAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAG TCAGCCGATCCCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGC AGCAATAGATGGTTACCAGGTACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACT AATGGTATGGTGATGGATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGA ACACAGACGATCAATCCTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTG AGTATCTGCCACAGAACAATTCCAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTG TTCGAGCTGCTGACTTAATCGGTTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAG CTAGAGCCATAGATGCTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACG GCGAGAACGCTATGCCATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAG GTGCAGGCCCGATCCAGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCAT TCACGAGGTGCAAAGCATAATATCAGTGTCCTTTGTGAATCCTGAAATCATCCGTATGTT GCATACTAACCGTTTTCATTCTTTGCAAGGTACAATATGTGTGCGGTCTCCAATCAAGGC GGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAACG GTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACATGGGCTCC ACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGGC AACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGA AAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAA GAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGGT GGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGC CATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACACCAATAACGGGAGCACC GCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAAA AGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGA GAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTG GCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACC GTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACAG CTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGA AGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGGA GGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGC TCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGT GAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTCAGGTGTCA TCAATCAACGCATATTTGTGGTTTCTTTCTAGTTACCGGGCAGACATCATCAT
Protein Sequence (293 aa)
>BART1_0-u07987.027 293 150831_barley_pseudomolecules MFPLGARQPPPSAMDNQQQQQPPRGEHAAQPRCWEEFLHRKTIRVLLVETDDSTRQVVAA LLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGLSGIDLLGRIMNHEVCKDI PVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLWAHVWRRSHSSSGSGSGSAIQT QKCTKSKSGDDSNNNSNDRNDDASMGLNARDGSDNGSGTQSSWTKRAVEIDSPQDMSPDQ SADPPEGTCAHVNHPKSEICSNRWLPGTNNKKCQKPKETTNGMVMDSKARSWR