- Transcript BART1_0-u07987.031
- Transcript IDBART1_0-u07987.031
- Gene IDBART1_0-u07987
Barley RTD
Exon Structure of BART1_0-u07987.031
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29123857 | 29123740 | + |
| chr2H | 2 | 29124505 | 29124321 | + |
| chr2H | 3 | 29124781 | 29124617 | + |
| chr2H | 4 | 29124992 | 29124859 | + |
| chr2H | 5 | 29125344 | 29125189 | + |
| chr2H | 6 | 29125969 | 29125780 | + |
| chr2H | 7 | 29126484 | 29126067 | + |
| chr2H | 8 | 29127230 | 29126567 | + |
| chr2H | 9 | 29127832 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0128736 | 0 | 0 |
| morex | ETI | 0.0028465 | 0.100441 | 0.130942 |
| morex | LEA | 0 | 0 | 0.000018911 |
| morex | EPI | 81.6546 | 56.835 | 87.6564 |
| morex | ROO | 0.000000186844 | 0 | 0 |
| morex | ROO2 | 0 | 0.79216 | 0.380072 |
| morex | NOD | 0 | 4.67346 | 6.28972 |
| morex | RAC | 6.16526 | 6.09216 | 5.71307 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0.000000259165 |
| morex | CAR5 | 0 | 0.814188 | 0.0000112607 |
| morex | CAR15 | 0 | 0.0000000100526 | 0 |
| morex | LEM | 21.2066 | 21.7685 | 11.8838 |
| morex | LOD | 1.74961 | 4.5836 | 3.95847 |
| morex | PAL | 10.2203 | 8.57642 | 9.64897 |
| morex | SEN | 31.3122 | 28.4648 | 18.8306 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +3 | 0.0 | 657 | 424/685 (62%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+3 | 6e-73 | 253 | 191/456 (42%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.7.p | +3 | 0.0 | 752 | 477/677 (70%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2533 bp)
>BART1_0-u07987.031 2533 150831_barley_pseudomolecules CCTCGCCTCCCACACCCACCCACACACACAGCACACCCTCCTCGGCTCGACTCGACTCGC CGCCGCCGCCGCAGTCCATGGCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGGC AGCCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACG CCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCG TGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACC AAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCA ACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGC TCGGCAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGC ACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCA AGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACA GCTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGA GCGGCGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCA ATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCAGGCGCAGAGCTCATGGACAAAGC GTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTG AAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTAC CAGGTACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGTGATGGATTCA AAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCC CGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATT CCAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCG GTTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTA ACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATC TTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGG AACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTACAATATGTGTG CGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCT CCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACA ACAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGG TTTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGC CAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAG CAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGG CCGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTT CGGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACA CCAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCG GTGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCG CCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACC AGAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGC CGCCGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTA CTCTACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCT CATCTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCA TAGAACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCG ATCAGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCT AGAATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGC AGCCTTGTCAGGTGTCATCAATCAACGCATATTTGTGGTTTCTTTCTAGTTACCGGGCAG ACATCATCATCGT
Protein Sequence (663 aa)
>BART1_0-u07987.031 663 150831_barley_pseudomolecules MDNQQQQQPPRGEHAAQPRCWEEFLHRKTIRVLLVETDDSTRQVVAALLRHCMYQVIPVE NGHQAWAYLQDMQSNIDLVLTEVFMHGGLSGIDLLGRIMNHEVCKDIPVIMMSSHDSMGT VLSCLSNGAADFLAKPIRKNELKNLWAHVWRRSHSSSGSGSGSAIQTQKCTKSKSGDDSN NNSNDRNDDASMGLNARDGSDNGSGTQAQSSWTKRAVEIDSPQDMSPDQSADPPEGTCAH VNHPKSEICSNRWLPGTNNKKCQKPKETTNGDGFKGKELEIGAPGNLNTDDQSSPNESSV KPTDGRCEYLPQNNSSDTVMENLEEPIVRAADLIGSMAKNMDAQQAAARAIDAPNCSLQA SEGKDTDGENAMPYLELSLKRSRSTGEGAGPIQEEQRNVVRRSDLSAFTRYNMCAVSNQG GAGFVGSCSPNGDSSEAAKTVAAQMKQGSNGSSNNNDMGSTTKSVVTKPCGNNKVSPING NTHTSAFHRVQPWTPATAAGKDKADEVSKKNVAAAAAAAKEMGCEAQSKHPCAAADDVNG GSAGGTAQSSVVNPSGPVEGHTANYGSNSFSNNNTNNGSTAATTAAAAAVHAETGGGVDK RSNMMNMKRERRVAAVNKFREKRKERNFGKKVRYQSRKRLAEQRPRVRWQFVRQPPAPAT VER