- Transcript BART1_0-u07987.041
- Transcript IDBART1_0-u07987.041
- Gene IDBART1_0-u07987
Barley RTD
Exon Structure of BART1_0-u07987.041
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29123857 | 29123760 | + |
| chr2H | 2 | 29124505 | 29124325 | + |
| chr2H | 3 | 29124781 | 29124617 | + |
| chr2H | 4 | 29124992 | 29124859 | + |
| chr2H | 5 | 29125344 | 29125189 | + |
| chr2H | 6 | 29125974 | 29125786 | + |
| chr2H | 7 | 29126484 | 29126067 | + |
| chr2H | 8 | 29127230 | 29126567 | + |
| chr2H | 9 | 29127978 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0.842631 | 0 |
| morex | EPI | 0.0462258 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0.480922 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0.00000893424 |
| morex | CAR5 | 0 | 0.0701 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.000000235886 | 0 | 0.0000000220167 |
| morex | LOD | 0.000000000337518 | 0 | 0.25333 |
| morex | PAL | 0.00447919 | 0 | 1.78527 |
| morex | SEN | 0.0323384 | 0 | 0.000000143327 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +3 | 0.0 | 342 | 189/255 (74%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+3 | 2e-62 | 224 | 135/269 (50%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.4.p | +2 | 3e-131 | 404 | 279/406 (69%) | pacid=32803661 transcript=Bradi1g16490.4 locus=Bradi1g16490 ID=Bradi1g16490.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2654 bp)
>BART1_0-u07987.041 2654 150831_barley_pseudomolecules CACACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATG GCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGCCTCCTCCTAGCGCCATGGACA ATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGG AGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTGGAGACCGACGACTCCACCAGGC AGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAAGTTATCCCCGTCGAGAACGGCC ACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAACATCGACCTTGTTCTCACAGAGG TGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTCGGCAGGATCATGAACCACGAGG TCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCACGATTCCATGGGCACCGTCCTCA GCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAGCCGATACGTAAGAACGAGCTTA AGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGCTCCAGTGGCAGTGGTAGTGGAA GTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCGGCGATGATTCCAATAACAACA GCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATGCAAGGGATGGCAGCGATAATG GCAGTGGCACTCAGAGCTCATGGACAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACA TGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCA AGTCAGAGATATGCAGCAATAGATGGTTACCAGGTACAAATAACAAAAAATGCCAGAAAC CAAAAGAAACCACTAATGGTATGGTGATGGATTCAAAGGCAAGGAGTTGGAGATAGGAGC CCCTGGTAATTTGAACACAGACGATCAATCCTCCCCGAACGAGAGTTCGGTCAAACCAAC CGATGGACGGTGTGAGTATCTGCCACAGAACAATTCCAGTGATACGGTCATGGAGAATTT GGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGGTTCGATGGCCAAAAACATGGACGC CCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAACTGCTCCTTACAGGCGTCGGAAGG GAAAGACACGGACGGCGAGAACGCTATGCCATATCTTGAGCTGAGCCTGAAGAGGTCGAG ATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAACAGAGGAACGTCGTGAGACGGTC AGACCTGTCGGCATTCACGAGGTACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGG GTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGC TCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACATGGGCTCCACCACGAA GAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGGCAACACACA CACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAA GGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGG TTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGC AGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGC CAACTATGGTAGCAACTCATTCAGCAATAACAACACCAATAACGGGAGCACCGCAGCTAC CACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAA CATGATGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAG AAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCA GCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAG ATAACCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACAGCTGATTCT TGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAAC GAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGGAGGAGGACG AGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAAT GTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTG TGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTCAGGTGTCATCAATCAA CGCATATTTGTGGTTTCTTTCTAGTTACCGGGCAGACATCATCATCGTACTTGTTGCAAA TCTGTCTAACCTGTGTCGGCATCACGCGACATGTGGAAGTTTTGTTGCACATTGTCTTTC ATTTTAAAAGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGGTGAAGACCGCTGAGACGAA ACCGCATTTGTAGA
Protein Sequence (344 aa)
>BART1_0-u07987.041 344 150831_barley_pseudomolecules MENLEEPIVRAADLIGSMAKNMDAQQAAARAIDAPNCSLQASEGKDTDGENAMPYLELSL KRSRSTGEGAGPIQEEQRNVVRRSDLSAFTRYNMCAVSNQGGAGFVGSCSPNGDSSEAAK TVAAQMKQGSNGSSNNNDMGSTTKSVVTKPCGNNKVSPINGNTHTSAFHRVQPWTPATAA GKDKADEVSKKNVAAAAAAAKEMGCEAQSKHPCAAADDVNGGSAGGTAQSSVVNPSGPVE GHTANYGSNSFSNNNTNNGSTAATTAAAAAVHAETGGGVDKRSNMMNMKRERRVAAVNKF REKRKERNFGKKVRYQSRKRLAEQRPRVRWQFVRQPPAPATVER