- Transcript BART1_0-u07987.007
- Transcript IDBART1_0-u07987.007
- Gene IDBART1_0-u07987
Barley RTD
Exon Structure of BART1_0-u07987.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29123857 | 29123714 | + |
| chr2H | 2 | 29124505 | 29124325 | + |
| chr2H | 3 | 29124781 | 29124617 | + |
| chr2H | 4 | 29124992 | 29124859 | + |
| chr2H | 5 | 29125344 | 29125189 | + |
| chr2H | 6 | 29125974 | 29125786 | + |
| chr2H | 7 | 29127230 | 29126067 | + |
| chr2H | 8 | 29127882 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.022094 | 0 | 0 |
| morex | LEA | 0 | 0.0417756 | 0.00000000555924 |
| morex | EPI | 8.76255 | 1.04229 | 5.74433 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0.00159751 | 0 |
| morex | RAC | 1.26818 | 0.000000880863 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 1.78523 | 2.54536 | 1.50093 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0.136352 | 1.11795 | 0.499775 |
| morex | SEN | 2.67492 | 1.9301 | 3.35237 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +1 | 2e-140 | 343 | 189/255 (74%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+1 | 2e-62 | 225 | 135/269 (50%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.7.p | +1 | 0.0 | 365 | 203/272 (75%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2686 bp)
>BART1_0-u07987.007 2686 150831_barley_pseudomolecules CCGATATCTACTCCTCCGCCCCCCTCCCTCGCCTCCCACACCCACCCACACACACAGCAC ACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATGGCCTCGTCGTCCTC CTCCTGACCGGCAGCAGACCCAAGCCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCAG CAGCCGCCGCGCGGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAGG AAGACCATCCGGGTCCTGCTCGTGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGCC CTGCTCCGCCACTGCATGTACCAAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGCG TATCTTCAGGACATGCAGAGCAACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGGC GGCCTCTCCGGGATCGACCTGCTCGGCAGGATCATGAACCACGAGGTCTGCAAGGACATC CCCGTCATCATGATGTCGTCGCACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAAT GGTGCTGCTGACTTCTTGGCCAAGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGCG CATGTGTGGCGACGGTCTCACAGCTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACT CAGAAGTGTACCAAATCAAAGAGCGGCGATGATTCCAATAACAACAGCAATGATCGCAAC GACGATGCCAGCATGGGGCTCAATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCAG AGCTCATGGACAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAG TCAGCCGATCCCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGC AGCAATAGATGGTTACCAGGTACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACT AATGGTATGGTGATGGATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGA ACACAGACGATCAATCCTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTG AGTATCTGCCACAGAACAATTCCAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTG TTCGAGCTGCTGACTTAATCGGTTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAG CTAGAGCCATAGATGCTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACG GCGAGAACGCTATGCCATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAG GTGCAGGCCCGATCCAGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCAT TCACGAGGTGCAAAGCATAATATCAGTGTCCTTTGTGAATCCTGAAATCATCCGTATGTT GCATACTAACCGTTTTCATTCTTTGCAAGGTACAATATGTGTGCGGTCTCCAATCAAGGC GGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAACG GTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACATGGGCTCC ACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGGC AACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGA AAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAA GAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGGT GGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGC CATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACACCAATAACGGGAGCACC GCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAAA AGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGA GAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTG GCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACC GTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACAG CTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGA AGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGGA GGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGC TCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGT GAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTCAGGTGTCA TCAATCAACGCATATTTGTGGTTTCTTTCTAGTTACCGGGCAGACATCATCATCGTACTT GTTGCAAATCTGTCTAACCTGTGTCGGCATCACGCGACATGTGGAA
Protein Sequence (333 aa)
>BART1_0-u07987.007 333 150831_barley_pseudomolecules PISTPPPPSLASHTHPHTQHTLLGSTRLAAAAAVHGLVVLLLTGSRPKPPPSAMDNQQQQ QPPRGEHAAQPRCWEEFLHRKTIRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWA YLQDMQSNIDLVLTEVFMHGGLSGIDLLGRIMNHEVCKDIPVIMMSSHDSMGTVLSCLSN GAADFLAKPIRKNELKNLWAHVWRRSHSSSGSGSGSAIQTQKCTKSKSGDDSNNNSNDRN DDASMGLNARDGSDNGSGTQSSWTKRAVEIDSPQDMSPDQSADPPEGTCAHVNHPKSEIC SNRWLPGTNNKKCQKPKETTNGMVMDSKARSWR