- Transcript BART1_0-u07987.040
- Transcript IDBART1_0-u07987.040
- Gene IDBART1_0-u07987
Barley RTD
Exon Structure of BART1_0-u07987.040
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29123857 | 29123760 | + |
| chr2H | 2 | 29124217 | 29123960 | + |
| chr2H | 3 | 29124505 | 29124325 | + |
| chr2H | 4 | 29124781 | 29124617 | + |
| chr2H | 5 | 29124992 | 29124859 | + |
| chr2H | 6 | 29125344 | 29125189 | + |
| chr2H | 7 | 29125969 | 29125786 | + |
| chr2H | 8 | 29127230 | 29126067 | + |
| chr2H | 9 | 29127895 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.768923 | 0.981677 | 0.0415508 |
| morex | ETI | 0.653744 | 0 | 0 |
| morex | LEA | 0 | 0.101707 | 3.28564 |
| morex | EPI | 0.000117662 | 0.0200311 | 0.00691963 |
| morex | ROO | 0.000000000300178 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0.056179 | 0.000000145002 | 0 |
| morex | RAC | 4.28886 | 3.10159 | 0.00812416 |
| morex | INF1 | 0.613736 | 0.00362255 | 0.000000141261 |
| morex | INF2 | 0 | 0.601279 | 0 |
| morex | CAR5 | 0.26431 | 0.262672 | 0.00484161 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.0000046417 | 1.21199 | 0 |
| morex | LOD | 0.933231 | 0.000536295 | 0.114855 |
| morex | PAL | 0 | 0.00000000672443 | 0 |
| morex | SEN | 0.00905761 | 1.60568 | 0.000000636757 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +3 | 7e-169 | 512 | 287/404 (71%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+3 | 8e-68 | 241 | 178/419 (42%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.7.p | +3 | 0.0 | 530 | 298/403 (74%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2906 bp)
>BART1_0-u07987.040 2906 150831_barley_pseudomolecules CACACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATG GCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGGGCACGCTCAGGCTCTCTCTAG CTGCTGCTAATAGTATGTGTCCGGAAATTGCTGGAGATTAACCGGCTCGCACGCCTTGTC TGCTACTGCCCCCCCTTATAGCCGCCGGCAGCTCCATTCCAGGAGACGATTCATTCCGCT GCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTTTGTTTTTATTGGTTTGGT CCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTCCCGGATGCGACCGAGCCTC CTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCCGCCC AGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTGGAGA CCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAAGTTA TCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAACATCG ACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTCGGCA GGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCACGATT CCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAGCCGA TACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGCTCCA GTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCGGCG ATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATGCAA GGGATGGCAGCGATAATGGCAGTGGCACTCAGAGCTCATGGACAAAGCGTGCCGTTGAGA TCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGGCACTTGTG CCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAGGTACAAATA ACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGTGATGGATTCAAAGGCAAGGAGT TGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCCGAACGAGAGTT CGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTCCAGTGATACGG TCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGGTTCGATGGCCA AAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAACTGCTCCTTAC AGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCTTGAGCTGAGCC TGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAACAGAGGAACG TCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTGCAAAGCATAATATCAGTGTCCTT TGTGAATCCTGAAATCATCCGTATGTTGCATACTAACCGTTTTCATTCTTTGCAAGGTAC AATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAAC GGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGC AGCAGCAACAACAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGA AATAATAAGGTTTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAG CCATGGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAAC GTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCC TGTGCAGCGGCCGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTT GTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGC AATAACAACACCAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACAT GCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGC CGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAG GTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTC GTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGCACCTAGCT ATACCTAGTACTCTACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGGATCATTGG GAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTTAG CGACCTACCATAGAACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAGCG TGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCAATCAATGT CTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTTGG CCATGGCGGCAGCCTTGTCAGGTGTCATCAATCAACGCATATTTGTGGTTTCTTTCTAGT TACCGGGCAGACATCATCATCGTACTTGTTGCAAATCTGTCTAACCTGTGTCGGCATCAC GCGACATGTGGAAGTTTTGTTGCACA
Protein Sequence (411 aa)
>BART1_0-u07987.040 411 150831_barley_pseudomolecules MDNQQQQQPPRGEHAAQPRCWEEFLHRKTIRVLLVETDDSTRQVVAALLRHCMYQVIPVE NGHQAWAYLQDMQSNIDLVLTEVFMHGGLSGIDLLGRIMNHEVCKDIPVIMMSSHDSMGT VLSCLSNGAADFLAKPIRKNELKNLWAHVWRRSHSSSGSGSGSAIQTQKCTKSKSGDDSN NNSNDRNDDASMGLNARDGSDNGSGTQSSWTKRAVEIDSPQDMSPDQSADPPEGTCAHVN HPKSEICSNRWLPGTNNKKCQKPKETTNGDGFKGKELEIGAPGNLNTDDQSSPNESSVKP TDGRCEYLPQNNSSDTVMENLEEPIVRAADLIGSMAKNMDAQQAAARAIDAPNCSLQASE GKDTDGENAMPYLELSLKRSRSTGEGAGPIQEEQRNVVRRSDLSAFTRCKA