- Transcript BART1_0-u07987.047
- Transcript IDBART1_0-u07987.047
- Gene IDBART1_0-u07987
Barley RTD
Exon Structure of BART1_0-u07987.047
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29125344 | 29125185 | + |
| chr2H | 2 | 29126174 | 29125786 | + |
| chr2H | 3 | 29128258 | 29126291 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0.778055 | 0.221614 |
| morex | EPI | 0.415337 | 0 | 0.701436 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0.277945 | 0 |
| morex | INF1 | 0.0996397 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0.17607 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0.1225 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +2 | 3e-37 | 122 | 74/108 (69%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g16490.4.p | +2 | 3e-117 | 221 | 181/309 (59%) | pacid=32803661 transcript=Bradi1g16490.4 locus=Bradi1g16490 ID=Bradi1g16490.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2517 bp)
>BART1_0-u07987.047 2517 150831_barley_pseudomolecules TCAGTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAA GAGCGGCGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCT CAATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCAGAGCTCATGGACAAAGCGTGC CGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGG CACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAGG TACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGTATGGTATGCTCAAG TGCCCAACCAGCTCACTGTGCAACTGAACCAAAAGCTGCTTGTGCCACTTCGTATTGATT AAGTTCCAATCTATTTTCCAGGTGATGGATTCAAAGGCAAGGAGTTGGAGATAGGAGCCC CTGGTAATTTGAACACAGACGATCAATCCTCCCCGAACGAGAGTTCGGTCAAACCAACCG ATGGACGGTGCAGCAGCTAGAGCCATAGATGCTCCTAACTGCTCCTTACAGGCGTCGGAA GGGAAAGACACGGACGGCGAGAACGCTATGCCATATCTTGAGCTGAGCCTGAAGAGGTCG AGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAACAGAGGAACGTCGTGAGACGG TCAGACCTGTCGGCATTCACGAGGTGCAAAGCATAATATCAGTGTCCTTTGTGAATCCTG AAATCATCCGTATGTTGCATACTAACCGTTTTCATTCTTTGCAAGGTACAATATGTGTGC GGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTC CGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAA CAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGT TTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCC AGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGC AGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGC CGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTC GGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACAC CAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGG TGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCGC CGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTACTAGGTTT TTCCCTAGAGCGGTCTCGTGTGTCCTCTGTTCTTCATTTCATTCTTCTTATTGGGGGTTC GTTTCTGAATGGGTCGTTCGTTTTGCAGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGA GCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGA GAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACAGCTGAT TCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAAT AACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGGAGGAGG ACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTG AATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTA TTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTCAGGTGTCATCAAT CAACGCATATTTGTGGTTTCTTTCTAGTTACCGGGCAGACATCATCATCGTACTTGTTGC AAATCTGTCTAACCTGTGTCGGCATCACGCGACATGTGGAAGTTTTGTTGCACATTGTCT TTCATTTTAAAAGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGGTGAAGACCGCTGAGAC GAAACCGCATTTGTAGATTCTTTACTACTACTACGGTGAAGTGCTCCCTGCGTTTCCTAT CCAAGCGTTGTAGCATGCACTCGTCTTGCTTCAGCATCCTTGCGCGGCGGACTCCAGCCT TTCGTCGACGAACAAGCACGAATCTTGGCTGGTGCTGGTGCTGGTGCAGAACACTTGAGA ATGTACCGGGGGGACGAAGGAACCGGATCCTGTAGAGGACCACACGGGTAAATCCGTAAC CGGTGGACGAGGCGAGTTGCTCCACGATGTTTTAGGTGGTGTTTCTTTTCAAGGGAC
Protein Sequence (284 aa)
>BART1_0-u07987.047 284 150831_barley_pseudomolecules MCAVSNQGGAGFVGSCSPNGDSSEAAKTVAAQMKQGSNGSSNNNDMGSTTKSVVTKPCGN NKVSPINGNTHTSAFHRVQPWTPATAAGKDKADEVSKKNVAAAAAAAKEMGCEAQSKHPC AAADDVNGGSAGGTAQSSVVNPSGPVEGHTANYGSNSFSNNNTNNGSTAATTAAAAAVHA ETGGGVDKRSNMMNMKRERRVAAVNKFREKRKERNFGKKVLGFSLERSRVSSVLHFILLI GGSFLNGSFVLQVRYQSRKRLAEQRPRVRWQFVRQPPAPATVER