- Transcript BART1_0-u07987.033
- Transcript IDBART1_0-u07987.033
- Gene IDBART1_0-u07987
Barley RTD
Exon Structure of BART1_0-u07987.033
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29123857 | 29123741 | + |
| chr2H | 2 | 29124217 | 29123960 | + |
| chr2H | 3 | 29124505 | 29124325 | + |
| chr2H | 4 | 29124781 | 29124617 | + |
| chr2H | 5 | 29124992 | 29124859 | + |
| chr2H | 6 | 29125344 | 29125189 | + |
| chr2H | 7 | 29127230 | 29125786 | + |
| chr2H | 8 | 29128150 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.31616 | 0.325216 | 0.124234 |
| morex | EPI | 0.576762 | 1.08449 | 1.22549 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0.0459166 |
| morex | NOD | 0.117472 | 0 | 0 |
| morex | RAC | 0.123147 | 0 | 0.07938 |
| morex | INF1 | 0 | 0.155733 | 0 |
| morex | INF2 | 0.554774 | 0.147637 | 0.029055 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.196792 | 0 | 0.0675696 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.388391 | 0.699754 | 0.349543 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +1 | 1e-139 | 341 | 189/255 (74%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+1 | 1e-61 | 224 | 132/249 (53%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g65910.4.p | +1 | 8e-115 | 299 | 178/291 (61%) | pacid=32794230 transcript=Bradi1g65910.4 locus=Bradi1g65910 ID=Bradi1g65910.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3277 bp)
>BART1_0-u07987.033 3277 150831_barley_pseudomolecules CTCGCCTCCCACACCCACCCACACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCC GCCGCCGCCGCAGTCCATGGCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGGGC ACGCTCAGGCTCTCTCTAGCTGCTGCTAATAGTATGTGTCCGGAAATTGCTGGAGATTAA CCGGCTCGCACGCCTTGTCTGCTACTGCCCCCCCTTATAGCCGCCGGCAGCTCCATTCCA GGAGACGATTCATTCCGCTGCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTT TTGTTTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTC CCGGATGCGACCGAGCCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCG CGCGGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATC CGGGTCCTGCTCGTGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGC CACTGCATGTACCAAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAG GACATGCAGAGCAACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCC GGGATCGACCTGCTCGGCAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATC ATGATGTCGTCGCACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCT GACTTCTTGGCCAAGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGG CGACGGTCTCACAGCTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGT ACCAAATCAAAGAGCGGCGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCC AGCATGGGGCTCAATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCAGAGCTCATGG ACAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGAT CCCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGA TGGTTACCAGGTACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGTATG GTATGCTCAAGTGCCCAACCAGCTCACTGTGCAACTGAACCAAAAGCTGCTTGTGCCACT TCGTATTGATTAAGTTCCAATCTATTTTCCAGGTGATGGATTCAAAGGCAAGGAGTTGGA GATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCCGAACGAGAGTTCGGT CAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTCCAGTGATACGGTCAT GGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGGTTCGATGGCCAAAAA CATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAACTGCTCCTTACAGGC GTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCTTGAGCTGAGCCTGAA GAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAACAGAGGAACGTCGT GAGACGGTCAGACCTGTCGGCATTCACGAGGTGCAAAGCATAATATCAGTGTCCTTTGTG AATCCTGAAATCATCCGTATGTTGCATACTAACCGTTTTCATTCTTTGCAAGGTACAATA TGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCG ACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCA GCAACAACAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATA ATAAGGTTTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCAT GGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTG CAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTG CAGCGGCCGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCA ATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATA ACAACACCAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTG AGACCGGTGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTG TGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGC GTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGC GGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGCACCTAGCTATAC CTAGTACTCTACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGC TCGTCTCATCTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGAC CTACCATAGAACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTG GAGCCGATCAGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGA GCCTCTAGAATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCAT GGCGGCAGCCTTGTCAGGTGTCATCAATCAACGCATATTTGTGGTTTCTTTCTAGTTACC GGGCAGACATCATCATCGTACTTGTTGCAAATCTGTCTAACCTGTGTCGGCATCACGCGA CATGTGGAAGTTTTGTTGCACATTGTCTTTCATTTTAAAAGAAGAAGAAGAAGAAGAAGT AGAAGAAGAAGGTGAAGACCGCTGAGACGAAACCGCATTTGTAGATTCTTTACTACTACT ACGGTGAAGTGCTCCCTGCGTTTCCTATCCAAGCGTTGTAGCATGCACTCGTCTTGCTTC AGCATCCTTGCGCGGCGGACTCCAGCCTTTCGTCGACGAACAAGCACGAATCTTGGCTGG TGCTGGTGCTGGTGCAGAACACTTGAGAATGTACCGG
Protein Sequence (292 aa)
>BART1_0-u07987.033 292 150831_barley_pseudomolecules MDNQQQQQPPRGEHAAQPRCWEEFLHRKTIRVLLVETDDSTRQVVAALLRHCMYQVIPVE NGHQAWAYLQDMQSNIDLVLTEVFMHGGLSGIDLLGRIMNHEVCKDIPVIMMSSHDSMGT VLSCLSNGAADFLAKPIRKNELKNLWAHVWRRSHSSSGSGSGSAIQTQKCTKSKSGDDSN NNSNDRNDDASMGLNARDGSDNGSGTQSSWTKRAVEIDSPQDMSPDQSADPPEGTCAHVN HPKSEICSNRWLPGTNNKKCQKPKETTNGMVCSSAQPAHCATEPKAACATSY