- Transcript BART1_0-u07987.044
- Transcript IDBART1_0-u07987.044
- Gene IDBART1_0-u07987
Barley RTD
Exon Structure of BART1_0-u07987.044
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29123857 | 29123769 | + |
| chr2H | 2 | 29124217 | 29123960 | + |
| chr2H | 3 | 29124505 | 29124317 | + |
| chr2H | 4 | 29124781 | 29124617 | + |
| chr2H | 5 | 29124992 | 29124859 | + |
| chr2H | 6 | 29125344 | 29125189 | + |
| chr2H | 7 | 29125974 | 29125780 | + |
| chr2H | 8 | 29126484 | 29126067 | + |
| chr2H | 9 | 29127230 | 29126567 | + |
| chr2H | 10 | 29127841 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.000000000320243 | 0 | 0 |
| morex | LEA | 0 | 0 | 0.000457993 |
| morex | EPI | 0.166342 | 0.00711919 | 0.000168681 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0.171391 |
| morex | NOD | 0 | 1.93997 | 0.00000000361296 |
| morex | RAC | 0.40252 | 0 | 0.00000000181751 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0.000009215 | 0 |
| morex | CAR5 | 0 | 0.0246823 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.0646156 | 0.000000115806 | 0.000786248 |
| morex | LOD | 2.32174 | 0.195016 | 0.081151 |
| morex | PAL | 0.00178448 | 0 | 0.471892 |
| morex | SEN | 0.301679 | 0 | 1.81239 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +2 | 0.0 | 350 | 199/296 (67%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+2 | 2e-60 | 220 | 136/271 (50%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.4.p | +1 | 8e-131 | 404 | 279/406 (69%) | pacid=32803661 transcript=Bradi1g16490.4 locus=Bradi1g16490 ID=Bradi1g16490.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2780 bp)
>BART1_0-u07987.044 2780 150831_barley_pseudomolecules AGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATGGCCTCGTCG TCCTCCTCCTGACCGGCAGCAGACCCAAGGGCACGCTCAGGCTCTCTCTAGCTGCTGCTA ATAGTATGTGTCCGGAAATTGCTGGAGATTAACCGGCTCGCACGCCTTGTCTGCTACTGC CCCCCCTTATAGCCGCCGGCAGCTCCATTCCAGGAGACGATTCATTCCGCTGCAGTCTCA ACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTTTGTTTTTATTGGTTTGGTCCGCTGCTC CGCCGCCGTCGACGACGAACGCCGTGGGACTCCCGGATGCGACCGAGCCAGGCAGCCTCC TCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCCGCCCA GCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTGGAGAC CGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAAGTTAT CCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAACATCGA CCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTCGGCAG GATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCACGATTC CATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAGCCGAT ACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGCTCCAG TGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCGGCGA TGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATGCAAG GGATGGCAGCGATAATGGCAGTGGCACTCAGGCGCAGAGCTCATGGACAAAGCGTGCCGT TGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGGCAC TTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAGGTAC AAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGTATGGTGATGGATTCAAA GGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCCG AACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTCC AGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGGT TCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAAC TGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCTT GAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAA CAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTACAATATGTGTGCG GTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTCC GAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAAC AATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGTT TCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCCA GCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCA GCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGCC GATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCG GGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACACC AATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGGT GGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCGCC GTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAG AGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCG CCGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTACT CTACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCA TCTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATA GAACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGAT CAGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAG AATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAG CCTTGTCAGGTGTCATCAATCAACGCATATTTGTGGTTTCTTTCTAGTTACCGGGCAGAC ATCATCATCGTACTTGTTGC
Protein Sequence (344 aa)
>BART1_0-u07987.044 344 150831_barley_pseudomolecules MENLEEPIVRAADLIGSMAKNMDAQQAAARAIDAPNCSLQASEGKDTDGENAMPYLELSL KRSRSTGEGAGPIQEEQRNVVRRSDLSAFTRYNMCAVSNQGGAGFVGSCSPNGDSSEAAK TVAAQMKQGSNGSSNNNDMGSTTKSVVTKPCGNNKVSPINGNTHTSAFHRVQPWTPATAA GKDKADEVSKKNVAAAAAAAKEMGCEAQSKHPCAAADDVNGGSAGGTAQSSVVNPSGPVE GHTANYGSNSFSNNNTNNGSTAATTAAAAAVHAETGGGVDKRSNMMNMKRERRVAAVNKF REKRKERNFGKKVRYQSRKRLAEQRPRVRWQFVRQPPAPATVER