Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u0798788.6++4171-536Containing




Transcripts from Gene HORVU2Hr1G013400

TranscriptLength(bp)Description
HORVU2Hr1G013400.13009gene=HORVU2Hr1G013400 CDS=484-1749
HORVU2Hr1G013400.21873gene=HORVU2Hr1G013400 CDS=473-1873
HORVU2Hr1G013400.32876gene=HORVU2Hr1G013400 CDS=481-1359
HORVU2Hr1G013400.42992gene=HORVU2Hr1G013400 CDS=473-1744
HORVU2Hr1G013400.52941gene=HORVU2Hr1G013400 CDS=473-1693
HORVU2Hr1G013400.62913gene=HORVU2Hr1G013400 CDS=363-1628
HORVU2Hr1G013400.72806gene=HORVU2Hr1G013400 CDS=353-1240
HORVU2Hr1G013400.82790gene=HORVU2Hr1G013400 CDS=360-1229
HORVU2Hr1G013400.93052gene=HORVU2Hr1G013400 CDS=550-1779
HORVU2Hr1G013400.102210gene=HORVU2Hr1G013400 CDS=454-2208
HORVU2Hr1G013400.112249gene=HORVU2Hr1G013400 CDS=454-2247
HORVU2Hr1G013400.122914gene=HORVU2Hr1G013400 CDS=454-1326
HORVU2Hr1G013400.132843gene=HORVU2Hr1G013400 CDS=350-1570
HORVU2Hr1G013400.142758gene=HORVU2Hr1G013400 CDS=346-1572
HORVU2Hr1G013400.152964gene=HORVU2Hr1G013400 CDS=542-1777
HORVU2Hr1G013400.162968gene=HORVU2Hr1G013400 CDS=542-1423
HORVU2Hr1G013400.173102gene=HORVU2Hr1G013400 CDS=542-1816
HORVU2Hr1G013400.182860gene=HORVU2Hr1G013400 CDS=372-1562
HORVU2Hr1G013400.192915gene=HORVU2Hr1G013400 CDS=346-1617
HORVU2Hr1G013400.202984gene=HORVU2Hr1G013400 CDS=541-1821
HORVU2Hr1G013400.211481gene=HORVU2Hr1G013400 CDS=1-954
HORVU2Hr1G013400.222779gene=HORVU2Hr1G013400 CDS=335-1615
HORVU2Hr1G013400.232612gene=HORVU2Hr1G013400 CDS=335-1252
HORVU2Hr1G013400.243104gene=HORVU2Hr1G013400 CDS=540-1421
HORVU2Hr1G013400.252471gene=HORVU2Hr1G013400 CDS=445-1716
HORVU2Hr1G013400.262426gene=HORVU2Hr1G013400 CDS=445-1671
HORVU2Hr1G013400.272906gene=HORVU2Hr1G013400 CDS=436-1716
HORVU2Hr1G013400.282957gene=HORVU2Hr1G013400 CDS=435-1709
HORVU2Hr1G013400.293011gene=HORVU2Hr1G013400 CDS=443-1321
HORVU2Hr1G013400.302986gene=HORVU2Hr1G013400 CDS=536-1423
HORVU2Hr1G013400.312886gene=HORVU2Hr1G013400 CDS=337-1215
HORVU2Hr1G013400.322797gene=HORVU2Hr1G013400 CDS=321-2336
HORVU2Hr1G013400.332816gene=HORVU2Hr1G013400 CDS=1321-2355
HORVU2Hr1G013400.342106gene=HORVU2Hr1G013400 CDS=2-2077
HORVU2Hr1G013400.351380gene=HORVU2Hr1G013400 CDS=1-1380
HORVU2Hr1G013400.361955gene=HORVU2Hr1G013400 CDS=561-1955
HORVU2Hr1G013400.371877gene=HORVU2Hr1G013400 CDS=3-1520
HORVU2Hr1G013400.381883gene=HORVU2Hr1G013400 CDS=3-1526
HORVU2Hr1G013400.391838gene=HORVU2Hr1G013400 CDS=3-1481
HORVU2Hr1G013400.401274gene=HORVU2Hr1G013400 CDS=495-1274



Exon Structure of HORVU2Hr1G013400


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g49460.2 +3 5e-139 338 189/255 (74%) protein|response regulator receiver domain containing protein, expressed
TAIR PP10 AT5G02810 @ ARAPORT
AT5G02810.1 @ TAIR		 +3 8e-61 221 135/269 (50%) Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727
BRACH PP3 Bradi1g65910.4.p +3 3e-113 295 178/293 (61%) pacid=32794230 transcript=Bradi1g65910.4 locus=Bradi1g65910 ID=Bradi1g65910.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons