Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u07987.013

ChromosomeExonStartStopDirection
chr2H12912385729123714+
chr2H22912421729123960+
chr2H32912450529124321+
chr2H42912478129124617+
chr2H52912499229124859+
chr2H62912534429125189+
chr2H72912592429125780+
chr2H82912648429126067+
chr2H92912723029126567+
chr2H102912823429127330+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB00.001060240.664707
morexETI000
morexLEA0.3835110.000000007045441.12578
morexEPI000
morexROO000
morexROO20.0008741500.00000000102266
morexNOD00.6975740
morexRAC000
morexINF10.0008968030.00003105370.00043176
morexINF200.0004361440.388786
morexCAR50.00000000029788500.33447
morexCAR15000
morexLEM0.0000002325740.9911170.0000535251
morexLOD000.00024145
morexPAL000.411234
morexSEN0.55289600.0306087



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g49460.2 +2 0.0 641 417/683 (61%) protein|response regulator receiver domain containing protein, expressed
TAIR PP10 AT5G02810 @ ARAPORT
AT5G02810.1 @ TAIR		 +2 4e-70 249 190/455 (42%) Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727
BRACH PP3 Bradi1g16490.7.p +2 0.0 731 469/671 (70%) pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3174 bp)

>BART1_0-u07987.013 3174 150831_barley_pseudomolecules
CCGATATCTACTCCTCCGCCCCCCTCCCTCGCCTCCCACACCCACCCACACACACAGCAC
ACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATGGCCTCGTCGTCCTC
CTCCTGACCGGCAGCAGACCCAAGGGCACGCTCAGGCTCTCTCTAGCTGCTGCTAATAGT
ATGTGTCCGGAAATTGCTGGAGATTAACCGGCTCGCACGCCTTGTCTGCTACTGCCCCCC
CTTATAGCCGCCGGCAGCTCCATTCCAGGAGACGATTCATTCCGCTGCAGTCTCAACCCC
CTTGCTCTTGTGTGTTTTTTTTGCGTTTTGTTTTTATTGGTTTGGTCCGCTGCTCCGCCG
CCGTCGACGACGAACGCCGTGGGACTCCCGGATGCGACCGAGGCAGCCTCCTCCTAGCGC
CATGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCCGCCCAGCCGCGATG
CTGGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTGGAGACCGACGACTC
CACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAAGTTATCCCCGTCGA
GAACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAACATCGACCTTGTTCT
CACAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTCGGCAGGATCATGAA
CCACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCACGATTCCATGGGCAC
CGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAGCCGATACGTAAGAA
CGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGCTCCAGTGGCAGTGG
TAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCGGCGATGATTCCAA
TAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATGCAAGGGATGGCAG
CGATAATGGCAGTGGCACTCAGGCGCAGAGCTCATGGACAAAGCGTGCCGTTGAGATCGA
CAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGGCACTTGTGCCCA
TGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAGGTGATGGATTCAA
AGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCC
GAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTC
CAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGG
TTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAA
CTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCT
TGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGA
ACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTACAATATGTGTGC
GGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTC
CGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAA
CAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGT
TTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCC
AGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGC
AGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGC
CGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTC
GGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACAC
CAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGG
TGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCGC
CGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCA
GAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCC
GCCGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTAC
TCTACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTC
ATCTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCAT
AGAACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGA
TCAGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTA
GAATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCA
GCCTTGTCAGGTGTCATCAATCAACGCATATTTGTGGTTTCTTTCTAGTTACCGGGCAGA
CATCATCATCGTACTTGTTGCAAATCTGTCTAACCTGTGTCGGCATCACGCGACATGTGG
AAGTTTTGTTGCACATTGTCTTTCATTTTAAAAGAAGAAGAAGAAGAAGAAGTAGAAGAA
GAAGGTGAAGACCGCTGAGACGAAACCGCATTTGTAGATTCTTTACTACTACTACGGTGA
AGTGCTCCCTGCGTTTCCTATCCAAGCGTTGTAGCATGCACTCGTCTTGCTTCAGCATCC
TTGCGCGGCGGACTCCAGCCTTTCGTCGACGAACAAGCACGAATCTTGGCTGGTGCTGGT
GCTGGTGCAGAACACTTGAGAATGTACCGGGGGGACGAAGGAACCGGATCCTGTAGAGGA
CCACACGGGTAAATCCGTAACCGGTGGACGAGGCGAGTTGCTCCACGATGTTTT



Protein Sequence (658 aa)

>BART1_0-u07987.013 658 150831_barley_pseudomolecules
MRPRQPPPSAMDNQQQQQPPRGEHAAQPRCWEEFLHRKTIRVLLVETDDSTRQVVAALLR
HCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGLSGIDLLGRIMNHEVCKDIPVI
MMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLWAHVWRRSHSSSGSGSGSAIQTQKC
TKSKSGDDSNNNSNDRNDDASMGLNARDGSDNGSGTQAQSSWTKRAVEIDSPQDMSPDQS
ADPPEGTCAHVNHPKSEICSNRWLPGDGFKGKELEIGAPGNLNTDDQSSPNESSVKPTDG
RCEYLPQNNSSDTVMENLEEPIVRAADLIGSMAKNMDAQQAAARAIDAPNCSLQASEGKD
TDGENAMPYLELSLKRSRSTGEGAGPIQEEQRNVVRRSDLSAFTRYNMCAVSNQGGAGFV
GSCSPNGDSSEAAKTVAAQMKQGSNGSSNNNDMGSTTKSVVTKPCGNNKVSPINGNTHTS
AFHRVQPWTPATAAGKDKADEVSKKNVAAAAAAAKEMGCEAQSKHPCAAADDVNGGSAGG
TAQSSVVNPSGPVEGHTANYGSNSFSNNNTNNGSTAATTAAAAAVHAETGGGVDKRSNMM
NMKRERRVAAVNKFREKRKERNFGKKVRYQSRKRLAEQRPRVRWQFVRQPPAPATVER